Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6247
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   7.8  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.8  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 461 CTSTIATIAKPES-RADVLLEAFSFALLSCNFLHERYAGV*SP 336
           C   +A I   +S R  VLL  F  A ++ N   E+ A V  P
Sbjct: 703 CCDNLAKIGSGQSTRVSVLLRLFKLAFMTVNVFPEKNAEVLRP 745


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -1

Query: 638  SCGDSWTSAILCKLPTASMFGKMQVLIMSASMWTATKSVVHTVKATSISFGTA 480
            S  DS TS++     TAS+ G +   I +AS+  +  S V  V +TS   GTA
Sbjct: 1060 SATDSSTSSVA----TASITGSLSSSIATASVTGSPTSSVTAVSSTSSVEGTA 1108


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 566 VLIMSASMWTATKSVVHTVKATSIS-FGTAVGAGFNCTST 450
           +LI+ +    +T+  +  V+ T    FGT  G G +CT T
Sbjct: 20  LLIIGSVSVPSTRMTLAKVEGTEFGIFGTCTGNGTDCTET 59


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 408 QNICPTFRFRYGGYGRSTIKSSPHCSTKGD 497
           QN  PTF   YG Y   +   +P+ ST  D
Sbjct: 144 QNAVPTFHPEYGRYMLESTPGAPYGSTLKD 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,532
Number of Sequences: 5004
Number of extensions: 56936
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)