Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6247
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907...    31   0.65 
07_01_0387 + 2902957-2904705                                           29   2.6  
05_01_0242 + 1804183-1806096                                           29   2.6  
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751...    29   4.6  
11_05_0093 + 18992027-18993514                                         28   6.0  
10_08_0348 + 17051521-17052092,17055173-17055998                       28   6.0  
09_02_0561 + 10681056-10682285,10682546-10682764                       28   8.0  
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479...    28   8.0  

>04_03_0767 +
           19389337-19389381,19390586-19390643,19390720-19390759,
           19390859-19390926,19391007-19391081,19391161-19391216,
           19391317-19391361,19391450-19391701,19391787-19391881,
           19392395-19392485,19392578-19392688,19392788-19392982,
           19393071-19393262
          Length = 440

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -3

Query: 387 PTKLQLPPREVRRRMKPVPRLYRRL 313
           PT+ QLPP+E  RR+ P+PRL +R+
Sbjct: 200 PTEPQLPPKERERRV-PMPRLRKRI 223


>07_01_0387 + 2902957-2904705
          Length = 582

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 390 RPTKLQLPPREVRRRMKPVPRL 325
           RP ++  PP E RRRM P+ RL
Sbjct: 42  RPMRVSAPPVEPRRRMNPLQRL 63


>05_01_0242 + 1804183-1806096
          Length = 637

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +1

Query: 457 VQLNPAPTAVPKEMLV-AFTVCTTLLVAVHMLALMISTCILPNIEAVGNLHSIALVHESP 633
           VQ    P  V    +V AF     L +A  +LA M+S    PN+     L          
Sbjct: 249 VQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKV 308

Query: 634 HERL---HWYIEVAWAFSTL 684
           H+ L   HW ++  WA ST+
Sbjct: 309 HDALSMWHWMVDEGWAPSTI 328


>04_03_0258 -
           13573730-13573816,13573881-13574666,13575043-13575126,
           13575254-13575322,13575324-13576228,13576517-13576784
          Length = 732

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 496 MLVAFTVCTTLLVAVHMLALMISTCILPNIEAVGNL 603
           M +  T+  + L  + +L LMIS C  P+  A GNL
Sbjct: 14  MKLHITIPVSTLKMLELLKLMISACAFPHDTAEGNL 49


>11_05_0093 + 18992027-18993514
          Length = 495

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 432 FRYGGYGRSTIKSSPHCSTKGDARRFHGVHNTLSRS 539
           FRY GY R    +SP    + D   FH ++ + S S
Sbjct: 210 FRYAGYARRFSLASPPDMARADLHFFHDMYASASTS 245


>10_08_0348 + 17051521-17052092,17055173-17055998
          Length = 465

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 476 GAGFNCTSTIATIAKPESRADV 411
           GAGF C S + T+ KP S A V
Sbjct: 414 GAGFKCNSCVWTVEKPVSDAGV 435


>09_02_0561 + 10681056-10682285,10682546-10682764
          Length = 482

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 651 PVESLVWRLMDERYTMQVADCFDVW 577
           PVE + W    +  TM++A+C + W
Sbjct: 388 PVEGMTWMFSVDLETMEIAECKEDW 412


>07_01_0641 -
           4790704-4790720,4790824-4791296,4791707-4792023,
           4792094-4792423
          Length = 378

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 332 PDCIGVSPDITHLCFYKRIDLISCFSD---QRIEYSGFRYAAIQ 210
           P  +G +P   H C Y R  L  CFSD    RI  S  +Y  I+
Sbjct: 185 PAMVGSTPFCDHQCGYWRGALYVCFSDCFVMRISPSDNKYRVIR 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,046,481
Number of Sequences: 37544
Number of extensions: 400600
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)