Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6247
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical pr...    80   2e-15
Z83122-4|CAB05602.2|  664|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical
           protein C09F5.2 protein.
          Length = 293

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 41/84 (48%), Positives = 58/84 (69%)
 Frame = +1

Query: 430 GFAMVAMVEVQLNPAPTAVPKEMLVAFTVCTTLLVAVHMLALMISTCILPNIEAVGNLHS 609
           GFAMV +VE+Q + +    PK +L+   V T+LLV+VH+LALM+STCILP +EA G    
Sbjct: 128 GFAMVCLVELQYDQS---TPKPLLIVLGVVTSLLVSVHLLALMMSTCILPYMEATG---- 180

Query: 610 IALVHESPHERLHWYIEVAWAFST 681
                +SPH +L +YI+++W FST
Sbjct: 181 --CTQDSPHIKLKFYIDLSWLFST 202


>Z83122-4|CAB05602.2|  664|Caenorhabditis elegans Hypothetical
           protein R11A5.7 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 514 VCTTLLVAVHMLALMISTCILPNIEAVGNLHSIALVHESPHE 639
           +C ++L+AVH + L+ S C   ++    + +  AL+H S H+
Sbjct: 4   LCKSILLAVHTILLVGSVCCSTDVHNTDDKY--ALIHVSAHD 43


>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = -1

Query: 299 HLCFYKRIDLISCFSDQRIEYSGFRYAAIQS*TSCTTILPSEASRSLAGY 150
           H   Y  +D+++   +   EYSG  +  +        ++   ASR++A +
Sbjct: 126 HKTLYDNVDVVTIRENTEGEYSGIEHEIVPGVVQSIKLITETASRNVASF 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,599
Number of Sequences: 27780
Number of extensions: 323284
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)