Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6247
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 513 GVHNTLSRSPHARAHD*HLHFAKHRSSRQLA*YSARP*VATRE 641
           G H + ++  H +AH+ H+ + + + S Q A   ++P +  R+
Sbjct: 184 GQHQSQAQQQHLQAHEQHMMYQQQQQS-QAASQQSQPGMHPRQ 225


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 328 TVSASHPT*RTCVFIRG 278
           T   +HP  R CVF+ G
Sbjct: 167 TAHVTHPRHRLCVFVAG 183


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 629 DSWTSAILCKLPTASMFGKMQVLI 558
           +SW + IL  +P  ++FG + V++
Sbjct: 186 NSWWALILVIVPCLTLFGNVLVIL 209


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 203 TSCTTILPSEASRSLAGYYI 144
           T+CT I+ + A ++   YY+
Sbjct: 60  TTCTVIIKNPAMQTATNYYL 79


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 444 HHSETGK*GRCFAGSLQFRPTKL 376
           H+S TGK   CF  SL +   K+
Sbjct: 162 HNSVTGKTTACFEPSLDYCVVKI 184


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 292 HKCVMSGETPIQSG 333
           HKC +  +T IQSG
Sbjct: 176 HKCTVCSKTFIQSG 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,131
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)