Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6246
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.68 
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    27   2.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.8  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   6.3  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   8.4  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   8.4  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
 Frame = -3

Query: 369 LENAITFSNL--GKMHPSIIDPNYLIEQLNYIQNNIDLRLAFDPNMESIHFWEKAITVKA 196
           L++A    N+  GK+   +I  N  I        N        P +E+ H   K    K 
Sbjct: 126 LQDASLHDNIQSGKLDNPVISQNRRIVLEKLANPNSSKEYETIPTVENRHPLNKLSKTKT 185

Query: 195 YGTNETLNFILEVPLVTNNPAN 130
               ET+N + E P  TN P N
Sbjct: 186 LAYEETINQLDETPGGTNYPMN 207


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 672 KSITGNLDENDAIQFENEIRTLKATTNNYVNNQKQ--SLDIMKDFMKAYENDLKH 514
           K +  NLD N   +F  EI  L+      ++ +KQ   L I +  +K  EN +K+
Sbjct: 629 KLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKY 683


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 636  IQFENEIRTLKATTNNYVNNQKQSLDIMKDFMKAYEN 526
            I+FE  ++TLK T+   +N  KQ    +    K Y N
Sbjct: 4149 IKFEGALQTLKKTSRMLINLAKQQHTPLSWIYKTYGN 4185


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = -3

Query: 675 IKSITGNLDENDAIQFENEIRTLKATTNNYVNNQKQSLDIMKDFMKAYENDLKHIVTNQL 496
           I+  T  L +N +  F+N   T+ +     +  +K S D  K   KA++  + H     L
Sbjct: 178 IRVQTRFLKKNKSSLFDNP--TIHSRQLESMAGRKLSTDEKKTLKKAFKEGVLHEALLDL 235

Query: 495 EIARKKDRY 469
            ++ + D+Y
Sbjct: 236 RVSSRSDKY 244


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = -3

Query: 312 PNYLIEQLNYIQNNIDLRLAFDPNMESIHFWEKAITVKAYGTNETLNFILEVPLVTNNPA 133
           PN L E + Y+   + L    DP ++S+ F + AI  +      ++        + N PA
Sbjct: 121 PNELEEDIEYMPPPVHL----DP-IQSLGFDDVAIDCETLDPWPSMQNKATSVTIRNTPA 175

Query: 132 NLLHLYSIPNDNNTILIP 79
           +  H+Y   +D++ I  P
Sbjct: 176 SDFHVYKEFSDDDPIQFP 193


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 201 KAYGTNETLNFILEVPLVTNNPAN 130
           +++G N   +F+ + P+ TN P+N
Sbjct: 17  QSFGVNSVSDFLAQFPIPTNLPSN 40


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 229 SFLGKSHYSESIRNKRNLKFYPRGTTG 149
           SFL   +  E + +  N+K+ PR T G
Sbjct: 635 SFLDIENIDEYLESAENMKYLPRSTVG 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,617
Number of Sequences: 5004
Number of extensions: 57564
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)