Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6246
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0205 + 1764034-1767601,1767934-1767944                           30   2.2  
12_02_1075 - 25854662-25855015,25855895-25856045,25856141-258563...    29   2.9  
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244...    29   2.9  
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341...    29   3.8  
10_01_0251 + 2641320-2643272                                           28   8.7  
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366...    28   8.7  

>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 2   SLSMISTQASCGYANSLFPKIMVGFLGIRIVLLS 103
           SL++I+ Q++ G A +LFP   +GF  + ++ LS
Sbjct: 259 SLTVINLQSNPGIAVNLFPDFFMGFANLTVLRLS 292


>12_02_1075 -
           25854662-25855015,25855895-25856045,25856141-25856378,
           25856494-25856704,25856973-25857088,25857844-25857877,
           25857996-25858253
          Length = 453

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -3

Query: 417 SDIERSLQQLYDRFSTLENAITFSNLGKMHPSIIDPNYLIEQLNYIQNNIDLRLAFDPNM 238
           S+  +  ++  +  S + N I   NL K+H   +D +  +   NY++NN   +  F  + 
Sbjct: 152 SESRQGTREFLNELSVISN-INHHNLVKLHGCCVDGDQKMLVYNYLENNSLAQSLFGNSH 210

Query: 237 ESIHF-WEKAITVKAYGTNETLNFILE 160
            SI   W+  + +   G    L ++ E
Sbjct: 211 SSIQLDWKTRVKI-CIGVASGLKYLHE 236


>04_04_1218 -
           31822915-31823141,31823418-31823832,31824090-31824440,
           31825391-31825549,31825965-31826093,31826257-31826460,
           31827200-31827412,31827547-31830912,31830999-31831150,
           31831912-31832407,31832646-31833456,31833537-31834728,
           31834856-31834922
          Length = 2593

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
 Frame = -3

Query: 705 RALIGGLGTI--IKSITGNLDENDAIQFENEIRTLKAT--------TNNYVNNQKQSLDI 556
           R+++ G  T+  +  I+GNLD  +A    +E+  +  T        ++N   NQK+ LD+
Sbjct: 315 RSVLFGSATLEQLSLISGNLDAGEAADIAHEVLIMVCTDPKNGLMPSSNLRGNQKRLLDL 374

Query: 555 MKDFMKAYE 529
           MK  +KA E
Sbjct: 375 MKK-LKATE 382


>10_08_0968 +
           21933627-21933785,21933893-21933943,21934094-21934129,
           21935011-21935076,21935163-21935210,21936424-21936453,
           21936651-21936719
          Length = 152

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 690 GLGTIIKSITGNLDENDAIQFENEIRTLKATTNNYVNNQKQSLDIMKDFMKAYENDL 520
           GLG ++KS+ G L    A++FE  +     +    VN  +    ++   + AYE DL
Sbjct: 77  GLGGMLKSVGGVLLPKSAVKFERYLMGEILSVGADVNEVEAGKKVLFSDINAYEVDL 133


>10_01_0251 + 2641320-2643272
          Length = 650

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 25/114 (21%), Positives = 51/114 (44%)
 Frame = -3

Query: 342 LGKMHPSIIDPNYLIEQLNYIQNNIDLRLAFDPNMESIHFWEKAITVKAYGTNETLNFIL 163
           LGK++  I+D N+ +    YI  + +   A +  + S    +  + +  Y T E  N ++
Sbjct: 49  LGKVYKGILDDNHAVVVKKYIHMDSEEEFAKEVIVHSQINHKNIVRLIGYCT-EKNNLMM 107

Query: 162 EVPLVTNNPANLLHLYSIPNDNNTILIPKNPTIILGNNEFAYPHEACVEIMDND 1
            +  ++N   +  HL+ + N  +++ I  N  I    +   Y H  C  ++  D
Sbjct: 108 VMEYMSNGDLD-YHLH-VKNSLDSLDIRLNIAIDCA-DALGYMHSMCSPVLHGD 158


>03_05_0325 +
           23135816-23135894,23136161-23136333,23136440-23136613,
           23136881-23137004,23137090-23137190,23137337-23137423,
           23137801-23137896,23138209-23138329,23138475-23138603,
           23139458-23139549,23139660-23139771,23140189-23140541,
           23140670-23140899,23141179-23141278,23143357-23143411,
           23143548-23145496,23145587-23145745,23146514-23146685,
           23146758-23147056,23147246-23147521
          Length = 1626

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 621 EIRTLKATTNNYVNNQKQSLDIMKDFMKA 535
           E+RT   TT NY+N+++  L   +  +KA
Sbjct: 392 EVRTRAVTTQNYINSKEDILIYARKLLKA 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,154
Number of Sequences: 37544
Number of extensions: 309248
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)