Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6245
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    28   1.2  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    28   1.2  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   2.8  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    26   4.9  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    26   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.6  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.6  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   8.6  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   8.6  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   8.6  

>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 478 NNSRNMHIAIRWSWNIFSLLFENFSLALKFRFTRYNRI 365
           ++S+N++  +RW + +    F  +SL  + RF  YN +
Sbjct: 16  DSSKNLN-KLRWKFRLLESQFALYSLPCQLRFVHYNNL 52


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 433 YSKTILWRYAYSCCCFRKVTQ 495
           YS+++LW YAY+C  F   T+
Sbjct: 379 YSQSVLWPYAYTCDLFPPDTE 399


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 552 NTVSNLPRLIIEKLKILMLHLGGMAGSKALRITFNTNSTTSIQCHPQN 695
           NTV+ +PR +++ ++  +  L      +  R+ + +  TTS  CH  N
Sbjct: 27  NTVTEVPRTVLQDVEANIAALMQATKQRDPRLVYRSLRTTSNICHRLN 74


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 305 HGMALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIFKQQG 427
           +G  +++   G +FAE+    P+ S K +L +  KIF   G
Sbjct: 251 YGKEIDMWSIGCIFAEMITRTPLFSGKSELDQLYKIFNLLG 291


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 200 LDKSRELEIGIHWKDWRGLCAIKFLRLEEFIDDIR 304
           +DK+RE     HWK W G+    +++ +  ++ +R
Sbjct: 54  IDKARE-NFEAHWKSWIGIEDFSYMK-QHLVNSVR 86


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 637  PLGLPSTPTPQLPFSATP 690
            P G PS P P LP S+ P
Sbjct: 1724 PAGPPSAPPPPLPASSAP 1741


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = +3

Query: 519  IFKMLI*LHHNNTVSNLPRLIIEKLKILMLHLGG 620
            +F+M+  L+++  V++  R +IEK+ + ++ LGG
Sbjct: 1502 VFEMICTLYNSCVVNSEIRTLIEKILLKVVALGG 1535


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 149 SWRPCSQQAWDQRFTIKLDKSRELEIGIH-WKDWRGLCAIKFLRLEEFIDDIRHGMALEL 325
           SW+  + +  D+++ +K +K + + I         G   I  L    F DD++    LEL
Sbjct: 76  SWKEYAIKVLDKKYIVKENKVKYVNIERDSMMRLNGFPGISRL-FHTFQDDLKLYYVLEL 134

Query: 326 EPQGLLFAEIK 358
            P G L   IK
Sbjct: 135 APNGELLQYIK 145


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 148 KLETLLSTSLGSKIHYQIRQVKRVGNWNTLERLAWFMCYQ 267
           K+ TL + SLGS  +   +  + + N   LE ++W + Y+
Sbjct: 21  KMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWYR 60


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 194 IKLDKSRELEIGIHWKDWRGLCAIKFLRLEEFIDDIRHG-MALELEPQGLLFAEIKFLNP 370
           IK+   R   IG+     R L     LRL +   D +H  +ALE  P G LF  I+   P
Sbjct: 40  IKIIPIRYASIGMEILMMRLLRHPNILRLYDVWTDHQHMYLALEYVPDGELFHYIRKHGP 99

Query: 371 IISRK 385
           +  R+
Sbjct: 100 LSERE 104


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 362 LNPIISRKPKLQRQRKIFKQQGKNIP 439
           L+P+I R+ ++QR  +I  ++ KN P
Sbjct: 110 LDPVIGREEEIQRTIQILSRRTKNNP 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,297
Number of Sequences: 5004
Number of extensions: 64386
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)