Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6245
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0169 - 6142199-6142581,6143015-6143095,6143313-6143691,614... 32 0.55
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 32 0.55
11_01_0214 - 1682731-1682744,1683597-1683640,1684284-1684372,168... 29 3.9
06_03_0680 - 23470292-23470384,23470499-23470606,23471145-234713... 29 5.2
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 29 5.2
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 6.8
06_03_0435 - 20742551-20743351 28 6.8
02_04_0243 + 21244743-21245837,21245921-21246148,21246240-212464... 28 6.8
01_01_0710 + 5492389-5492745,5493664-5493948,5494121-5494438,549... 28 6.8
11_02_0141 + 8744928-8746187 28 9.0
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780... 28 9.0
>10_02_0169 -
6142199-6142581,6143015-6143095,6143313-6143691,
6144019-6144372
Length = 398
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 422 QGKNIPRPSYGDMHIPAVVLGRLLKRSSPSIQNIQ 526
QG N PRP Y +PA GR+ +S PS++N++
Sbjct: 233 QGWNQPRPYY--QGVPAAESGRIPGQSEPSVENVK 265
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 31.9 bits (69), Expect = 0.55
Identities = 27/106 (25%), Positives = 43/106 (40%)
Frame = +2
Query: 314 ALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIFKQQGKNIPRPSYGDMHIPAVVLGRLL 493
AL+ E + L KF + S K+Q + + K + I A L+
Sbjct: 257 ALQAEKEALTADVEKFEAVVKSWTVKIQEKEESSVHLEKELEAKLMDQQRI-AAENEELM 315
Query: 494 KRSSPSIQNIQNAHITTSQQHSFESATFDNREIENPNVTLGGYGWE 631
K+ + N+++ Q +S DN ++EN N TL GWE
Sbjct: 316 KKVDAQVVNVRDVD---RMQREIQSVERDNVKLENGNATLEEKGWE 358
>11_01_0214 -
1682731-1682744,1683597-1683640,1684284-1684372,
1684461-1684505,1685044-1685073,1685189-1685296,
1685380-1685465,1686180-1686267,1687494-1687694,
1687885-1687960,1688040-1688089,1688180-1688242,
1688322-1688398,1688893-1688953,1689377-1689417,
1690005-1690086
Length = 384
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 116 RLPLF-HCWCLLLYCKYISLNCVWL 45
R P F C C+ ++C I ++C+WL
Sbjct: 125 RFPYFLPCLCISIFCFVILISCIWL 149
>06_03_0680 -
23470292-23470384,23470499-23470606,23471145-23471368,
23473628-23473859
Length = 218
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 356 KFLNPIISRKPKLQRQRKIFKQQGKNIPRPS 448
+F N + R +L++ + FK+QG IP PS
Sbjct: 80 EFRNTGLERSEQLKKDLEWFKEQGHTIPEPS 110
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 281 EEFIDDIRHGMALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIFKQQG 427
E + R+G A+++ G +FAE+ PI++ K + ++ KIF+ G
Sbjct: 222 ELLLGSTRYGPAVDMWSVGCIFAELLNGKPILTGKNEPEQLSKIFELCG 270
>12_02_0228 + 15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 637 PLGLPSTPTPQLPFSATPKTYFASSTSS 720
P GLPS+ +TP T FAS+TS+
Sbjct: 962 PFGLPSSSPSTPTLFSTPATQFASATSA 989
>06_03_0435 - 20742551-20743351
Length = 266
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 600 LMLHLGGMAGSKALRITFNTNSTTSIQCH 686
L+LH G +AG+KAL NT + T+ H
Sbjct: 31 LLLHRGKIAGNKALGKIMNTTTATASHGH 59
>02_04_0243 +
21244743-21245837,21245921-21246148,21246240-21246458,
21246557-21247000,21247440-21247547,21247790-21247909
Length = 737
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 305 HGMALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIFKQQG 427
+G+A++L G + AE+ PI+ + ++++ KIFK G
Sbjct: 337 YGVAVDLWSTGCILAELLAGKPILPGQTEIEQLHKIFKLCG 377
>01_01_0710 +
5492389-5492745,5493664-5493948,5494121-5494438,
5494900-5495127,5495884-5495984,5496493-5496604,
5496654-5496662,5496897-5497340,5497649-5497909
Length = 704
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 305 HGMALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIFKQQG 427
+G+A++L G + AE+ PI+ + ++++ KIFK G
Sbjct: 292 YGVAVDLWSSGCILAELYAGKPIMPGRTEVEQLHKIFKLCG 332
>11_02_0141 + 8744928-8746187
Length = 419
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 649 PSTPTPQLPFSATPKTYFASST 714
PSTPTP P TP T+ S T
Sbjct: 37 PSTPTPSPPPPPTPTTFLPSPT 58
>01_06_1310 -
36176008-36176472,36176547-36176774,36177313-36178080,
36178250-36178732,36179883-36180010,36180539-36180607,
36180688-36180892,36181005-36181067
Length = 802
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 479 LGRLLKRSSPSIQNIQNA--HITTSQQHSFES 568
+ ++ RSSPSI IQ++ HITTS ES
Sbjct: 181 IAKVYVRSSPSIDRIQDSDIHITTSHLPGIES 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,467,021
Number of Sequences: 37544
Number of extensions: 372773
Number of successful extensions: 1074
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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