Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6245
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr...   104   8e-23
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr...   104   8e-23
U23177-1|AAA64332.1|  431|Caenorhabditis elegans Hypothetical pr...    46   4e-05
AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF106575-13|AAC78162.2|  393|Caenorhabditis elegans Serpentine r...    30   2.0  

>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score =  104 bits (249), Expect = 8e-23
 Identities = 44/116 (37%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
 Frame = +2

Query: 89  DTSNEIMAVLKLDNHNVAQTSWRPCSQQAWDQRFTIKLDKSRELEIGIHWKDWRGLCAIK 268
           ++S E+  VL++DN  +  T  R    + WDQ+F + LD+SREL+I + + D R +C   
Sbjct: 407 NSSEEVFCVLRIDNRFIGATELRKIVDRNWDQKFDVDLDRSRELQIELFYHDDRSMCGFA 466

Query: 269 FLRLEEFID-DIRHGMALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIFKQQGKN 433
            ++L   I+   + G+ + +EPQG +F + K++NP++SRKPKL+RQR++F+ +  N
Sbjct: 467 AVKLSNLIETSSKVGIIVPVEPQGNIFVQFKYMNPVVSRKPKLERQRRLFRVKESN 522


>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score =  104 bits (249), Expect = 8e-23
 Identities = 44/116 (37%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
 Frame = +2

Query: 89  DTSNEIMAVLKLDNHNVAQTSWRPCSQQAWDQRFTIKLDKSRELEIGIHWKDWRGLCAIK 268
           ++S E+  VL++DN  +  T  R    + WDQ+F + LD+SREL+I + + D R +C   
Sbjct: 407 NSSEEVFCVLRIDNRFIGATELRKIVDRNWDQKFDVDLDRSRELQIELFYHDDRSMCGFA 466

Query: 269 FLRLEEFID-DIRHGMALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIFKQQGKN 433
            ++L   I+   + G+ + +EPQG +F + K++NP++SRKPKL+RQR++F+ +  N
Sbjct: 467 AVKLSNLIETSSKVGIIVPVEPQGNIFVQFKYMNPVVSRKPKLERQRRLFRVKESN 522


>U23177-1|AAA64332.1|  431|Caenorhabditis elegans Hypothetical
           protein C56G2.5 protein.
          Length = 431

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
 Frame = +2

Query: 74  YSIKEDTSNEIMAVLKLDNHNVAQTSWRPCSQQAWDQRFTIKLDKSRELEIGIHWKDWRG 253
           Y  +    N+ + V+ +    VA   W            TI+L KSR+L+  I+  D R 
Sbjct: 235 YPNRSSAVNDYIIVIHVGGKEVATMVWNEKKTMVGGDEETIQLFKSRQLDFEIYHTDSRS 294

Query: 254 LCAIKFLRLEEFID--DIRHGMA------LELEPQGLLFAEIKFLNPIISRKPKL 394
           LCAI  ++LE  +D  D +   A      + L P+G L  +  + +P  S + KL
Sbjct: 295 LCAIGSMQLESLLDEHDAKFPFATFAHRVVNLIPEGTLHFQTTYSDPEQSMEKKL 349


>AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical
           protein F19B10.11 protein.
          Length = 505

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 674 GSCGVGVEGNPKGLTPSHTPQV*H*DFQFLYYQTWQIRNCVV 549
           G  G  V G  +GL P    +      Q   +Q WQI+NC+V
Sbjct: 451 GITGRAVNGYWRGLAPDEKQEWGKRSAQLRKWQNWQIKNCLV 492


>AF106575-13|AAC78162.2|  393|Caenorhabditis elegans Serpentine
           receptor, class w protein96 protein.
          Length = 393

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 173 LVESKVSNL--SEQHCDC--PALRLPLFHCWCLLLYCKYISLNCVWLLL 39
           +V S  SNL  S +  DC  P   L L+  W  L++C  +  + VWL +
Sbjct: 91  IVTSANSNLFFSREGTDCEPPVSYLALYIAWVTLVWCDLVRRSSVWLAI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,335,734
Number of Sequences: 27780
Number of extensions: 345902
Number of successful extensions: 1104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)