Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6244
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.8  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   6.4  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   6.4  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    24   8.5  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.5  

>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 397 RSKNFTSNVAXRMPPVIPINHYLGVLKTNKIEPRSYFIIPCTKYSSSIF 251
           +S   T  +  + P  + +N+    LKTN  EP   F+   T YS + F
Sbjct: 182 QSSLITLPLPQKQPDFLRMNNDTNELKTNGFEP-IRFVFTTTPYSPASF 229


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 289 NMISVLFCWFSELRGND 339
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 255 FLARFEHSNLFKVKLSAHLDTHRRAPR*DFD 163
           F A  +   L +  LS H+ TH  AP   FD
Sbjct: 143 FEAGIDSPLLCQASLSTHVKTHNNAPLTSFD 173


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 296 SRFYFVGFQNSEVMINRDNWGHSXCDVRGEILGS 397
           S+  F+G  ++   I++D +      +RG ++ S
Sbjct: 865 SKLSFIGSNHTRYRIDKDEFSSGIASIRGTLMSS 898


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 73  AAHKCNYELFNRNNFSIRYWSWNY 2
           AA KC +E      FSI + S+N+
Sbjct: 73  AASKCEFEKIWSTTFSISFLSFNF 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,473
Number of Sequences: 5004
Number of extensions: 30333
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)