Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6243
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    28   1.4  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   2.5  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   5.8  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   7.7  

>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 527 PNAEPRLDRSANMFFTNKMSSES 459
           P+ +P  D+S+N+F T+K SS S
Sbjct: 346 PSQQPVADKSSNLFVTSKQSSVS 368


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 513 WFSIWKKRXISIMYFVSLALACSSMV 590
           WF+ +K R + I +FV   LACS ++
Sbjct: 331 WFNEYKYRSVKIFFFV--GLACSGLI 354


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 521 AEPRLDRSANMFFTNK---MSSESSKQISELTYPLA 423
           + P  + +AN FF +    MSSE +  +S +T PLA
Sbjct: 409 SSPASNSNANFFFGSSPQSMSSEQTDMMSPITSPLA 444


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 199 PPTCSSRLTCSHVAHVHTLH 140
           P  CSS L CSH + V  L+
Sbjct: 241 PKLCSSNLDCSHYSRVCVLY 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,799
Number of Sequences: 5004
Number of extensions: 43580
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)