Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6241
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81472-1|CAB03889.1|  173|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL021492-9|CAA16386.1|  407|Caenorhabditis elegans Hypothetical ...    27   7.0  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    27   9.3  

>Z81472-1|CAB03889.1|  173|Caenorhabditis elegans Hypothetical
           protein C16D6.1 protein.
          Length = 173

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 203 RDSER*AKDCVILSIESPLVQAVYGHRALFWFRSCPKESHPHSPP 337
           +DSE   K   +++++S +    Y H  + WF   P    PH PP
Sbjct: 36  KDSET-GKFVTLINLQSVIPYPPYRHNTM-WFNGGPPGPPPHGPP 78


>AL021492-9|CAA16386.1|  407|Caenorhabditis elegans Hypothetical
           protein Y45F10D.11a protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 352 TETHSQQGKRNKEE*NFLTHTPYNS 426
           +ETH      N E   FL++ PYNS
Sbjct: 161 SETHEDPSNNNTETPEFLSNKPYNS 185


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = -3

Query: 523 PRMCKMVTKNQISDRTHLVLVIVKLEYTTQQPYCYKACGLKSFIPLYFSSLVGNESLLSS 344
           P+M K      I D  H  +VI+K +       C++    + F+ + F ++   E +   
Sbjct: 448 PKMPKEYVTRLIFDSRHQNMVILKRDMGVIGGICFRTFPSRGFVEIVFCAITAMEQVKGY 507

Query: 343 G 341
           G
Sbjct: 508 G 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,574,020
Number of Sequences: 27780
Number of extensions: 245077
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)