Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6241
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    28   0.056
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    28   0.056
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.70 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   6.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   6.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   6.5  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   8.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 0.056
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 477 LIWCWSSSN*SIRPNSLTVIRRVG*KVLFLFISLPLLGMSLC*ARDIGGECGCD 316
           +IW +S+S     P+++ ++      ++  F  +P+L +S    R IG E GCD
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFDIIMAF-EMPMLVISSFMERMIGWEIGCD 130


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 0.056
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 477 LIWCWSSSN*SIRPNSLTVIRRVG*KVLFLFISLPLLGMSLC*ARDIGGECGCD 316
           +IW +S+S     P+++ ++      ++  F  +P+L +S    R IG E GCD
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFDIIMAF-EMPMLVISSFMERMIGWEIGCD 130


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 523 PRMCKMVTKNQISDRTHLVLVIVKLEYTTQQPYCYKACG 407
           P  C + +K  I       LVI    +T ++PY  KACG
Sbjct: 175 PHKCTVCSKTFIQSGQ---LVIHMRTHTGEKPYVCKACG 210


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 316 VTPTFASDVPSSTETHSQQGKRN 384
           +TP     +PS +  HS  G+ N
Sbjct: 371 ITPELLGLMPSGSSVHSDSGENN 393


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 564 LAWHYWGHDTFQLRLE 517
           L W  W +D +QL LE
Sbjct: 147 LKWASWTYDGYQLELE 162


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 448 EYTTQQPYC-YKACGLKSFIPLYFSSLVGNESLLSSGHRRR 329
           + T +Q Y  Y + G   FIPL   SLV  E  L++  R R
Sbjct: 189 QLTRRQGYVIYSSLG-SFFIPLLLMSLVYLEIYLATRRRLR 228


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 448 EYTTQQPYC-YKACGLKSFIPLYFSSLVGNESLLSSGHRRR 329
           + T +Q Y  Y + G   FIPL   SLV  E  L++  R R
Sbjct: 189 QLTRRQGYVIYSSLG-SFFIPLLLMSLVYLEIYLATRRRLR 228


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 448 EYTTQQPYC-YKACGLKSFIPLYFSSLVGNESLLSSGHRRR 329
           + T +Q Y  Y + G   FIPL   SLV  E  L++  R R
Sbjct: 189 QLTRRQGYVIYSSLG-SFFIPLLLMSLVYLEIYLATRRRLR 228


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 232 CDIEHRKSSSPSCVRSPGFILVPFMP*RVTPTFASDVPSS 351
           CD++ RK    + V S G  + P +  R+     +  PS+
Sbjct: 60  CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,135
Number of Sequences: 438
Number of extensions: 3146
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)