Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6239
(745 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U38254-1|AAC50283.1| 638|Homo sapiens amiloride sensitive sodiu... 31 5.8
DQ898176-1|ABI64069.1| 704|Homo sapiens sodium channel nonvolta... 31 5.8
DQ898175-1|ABI64068.1| 638|Homo sapiens sodium channel nonvolta... 31 5.8
BC125075-1|AAI25076.1| 378|Homo sapiens SCNN1D protein protein. 31 5.8
BC125074-1|AAI25075.1| 638|Homo sapiens sodium channel, nonvolt... 31 5.8
AL162741-20|CAI23262.1| 638|Homo sapiens sodium channel, nonvol... 31 5.8
AL162741-19|CAI23261.1| 704|Homo sapiens sodium channel, nonvol... 31 5.8
AK131558-1|BAD18692.1| 669|Homo sapiens protein ( Homo sapiens ... 31 5.8
AK093239-1|BAC04105.1| 704|Homo sapiens protein ( Homo sapiens ... 31 5.8
AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of Charl... 30 7.6
AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein. 30 7.6
>U38254-1|AAC50283.1| 638|Homo sapiens amiloride sensitive sodium
channel delta subunit protein.
Length = 638
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 566 RH-PP*DISSKISV*LQRLPHPSDRNELLLHGRNRQGGDAYPRGLTRGPTTRS---YYNY 733
RH PP + +I LQRL H R + N GGD + RG T G +++Y
Sbjct: 180 RHEPPFHLDREIR--LQRLSHSGSRVRVGFRLCNSTGGDCFYRGYTSGVAAVQDWYHFHY 237
Query: 734 VDL 742
VD+
Sbjct: 238 VDI 240
>DQ898176-1|ABI64069.1| 704|Homo sapiens sodium channel
nonvoltage-gated 1 delta protein.
Length = 704
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 566 RH-PP*DISSKISV*LQRLPHPSDRNELLLHGRNRQGGDAYPRGLTRGPTTRS---YYNY 733
RH PP + +I LQRL H R + N GGD + RG T G +++Y
Sbjct: 246 RHEPPFHLDREIR--LQRLSHSGSRVRVGFRLCNSTGGDCFYRGYTSGVAAVQDWYHFHY 303
Query: 734 VDL 742
VD+
Sbjct: 304 VDI 306
>DQ898175-1|ABI64068.1| 638|Homo sapiens sodium channel
nonvoltage-gated 1 delta protein.
Length = 638
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 566 RH-PP*DISSKISV*LQRLPHPSDRNELLLHGRNRQGGDAYPRGLTRGPTTRS---YYNY 733
RH PP + +I LQRL H R + N GGD + RG T G +++Y
Sbjct: 180 RHEPPFHLDREIR--LQRLSHSGSRVRVGFRLCNSTGGDCFYRGYTSGVAAVQDWYHFHY 237
Query: 734 VDL 742
VD+
Sbjct: 238 VDI 240
>BC125075-1|AAI25076.1| 378|Homo sapiens SCNN1D protein protein.
Length = 378
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 566 RH-PP*DISSKISV*LQRLPHPSDRNELLLHGRNRQGGDAYPRGLTRGPTTRS---YYNY 733
RH PP + +I LQRL H R + N GGD + RG T G +++Y
Sbjct: 180 RHEPPFHLDREIR--LQRLSHSGSRVRVGFRLCNSTGGDCFYRGYTSGVAAVQDWYHFHY 237
Query: 734 VDL 742
VD+
Sbjct: 238 VDI 240
>BC125074-1|AAI25075.1| 638|Homo sapiens sodium channel,
nonvoltage-gated 1, delta protein.
Length = 638
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 566 RH-PP*DISSKISV*LQRLPHPSDRNELLLHGRNRQGGDAYPRGLTRGPTTRS---YYNY 733
RH PP + +I LQRL H R + N GGD + RG T G +++Y
Sbjct: 180 RHEPPFHLDREIR--LQRLSHSGSRVRVGFRLCNSTGGDCFYRGYTSGVAAVQDWYHFHY 237
Query: 734 VDL 742
VD+
Sbjct: 238 VDI 240
>AL162741-20|CAI23262.1| 638|Homo sapiens sodium channel,
nonvoltage-gated 1, delta protein.
Length = 638
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 566 RH-PP*DISSKISV*LQRLPHPSDRNELLLHGRNRQGGDAYPRGLTRGPTTRS---YYNY 733
RH PP + +I LQRL H R + N GGD + RG T G +++Y
Sbjct: 180 RHEPPFHLDREIR--LQRLSHSGSRVRVGFRLCNSTGGDCFYRGYTSGVAAVQDWYHFHY 237
Query: 734 VDL 742
VD+
Sbjct: 238 VDI 240
>AL162741-19|CAI23261.1| 704|Homo sapiens sodium channel,
nonvoltage-gated 1, delta protein.
Length = 704
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 566 RH-PP*DISSKISV*LQRLPHPSDRNELLLHGRNRQGGDAYPRGLTRGPTTRS---YYNY 733
RH PP + +I LQRL H R + N GGD + RG T G +++Y
Sbjct: 246 RHEPPFHLDREIR--LQRLSHSGSRVRVGFRLCNSTGGDCFYRGYTSGVAAVQDWYHFHY 303
Query: 734 VDL 742
VD+
Sbjct: 304 VDI 306
>AK131558-1|BAD18692.1| 669|Homo sapiens protein ( Homo sapiens
cDNA FLJ16802 fis, clone TESTI4005158, highly similar
to Amiloride-sensitive sodium channel delta-subunit. ).
Length = 669
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 566 RH-PP*DISSKISV*LQRLPHPSDRNELLLHGRNRQGGDAYPRGLTRGPTTRS---YYNY 733
RH PP + +I LQRL H R + N GGD + RG T G +++Y
Sbjct: 211 RHEPPFHLDREIR--LQRLSHSGSRVRVGFRLCNSTGGDCFYRGYTSGVAAVQDWYHFHY 268
Query: 734 VDL 742
VD+
Sbjct: 269 VDI 271
>AK093239-1|BAC04105.1| 704|Homo sapiens protein ( Homo sapiens
cDNA FLJ35920 fis, clone TESTI2010591, highly similar to
AMILORIDE-SENSITIVE SODIUM CHANNEL DELTA-SUBUNIT. ).
Length = 704
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 566 RH-PP*DISSKISV*LQRLPHPSDRNELLLHGRNRQGGDAYPRGLTRGPTTRS---YYNY 733
RH PP + +I LQRL H R + N GGD + RG T G +++Y
Sbjct: 246 RHEPPFHLDREIR--LQRLSHSGSRVRVGFRLCNSTGGDCFYRGYTSGVAAVQDWYHFHY 303
Query: 734 VDL 742
VD+
Sbjct: 304 VDI 306
>AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of
Charlevoix-Saguenay (sacsin) protein.
Length = 4432
Score = 30.3 bits (65), Expect = 7.6
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -1
Query: 274 LRSICVTQEYRKRKFLTTYNLLLPTRFFLILN 179
L S+ T + ++ KFLTTY+ L+P+R L +N
Sbjct: 3012 LDSVLQTFDAKRPKFLTTYHELIPSRKDLFMN 3043
>AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein.
Length = 3829
Score = 30.3 bits (65), Expect = 7.6
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -1
Query: 274 LRSICVTQEYRKRKFLTTYNLLLPTRFFLILN 179
L S+ T + ++ KFLTTY+ L+P+R L +N
Sbjct: 2409 LDSVLQTFDAKRPKFLTTYHELIPSRKDLFMN 2440
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,802,718
Number of Sequences: 237096
Number of extensions: 2452345
Number of successful extensions: 3388
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3388
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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