Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6239
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical
           protein C45B11.2 protein.
          Length = 280

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 120 MGHAKYLERHEEIIRTFRYKVLRDSISERYSH 25
           +G+ K LERH+E +   RY+ + ++++E Y H
Sbjct: 205 VGYWKRLERHKESVLQLRYEKI-ENLNEDYEH 235


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 341 RFTICTVLKNFIFLLGFFSNKL*YV-I*IFDCRI 439
           RFT+C +LK+ +F   F+ ++L Y+   IF+C I
Sbjct: 127 RFTLCIILKDAVFGTSFWLDELKYLNDDIFECFI 160


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 526  SGYWSA*TSTNVNAPSTMRYKF*DLSIVTTAAPPFRPKRIT 648
            S YWS+ T  N + PS       DLS ++ A+P   PKRIT
Sbjct: 2082 SDYWSS-TGPNYDQPS-------DLSKLSRASPSLTPKRIT 2114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,648,957
Number of Sequences: 27780
Number of extensions: 386660
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)