Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6238
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    29   0.92 
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    28   1.2  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    27   3.7  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   6.5  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.6  

>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 37  VSPHGYVPPAKNQKKKKLAGQLDLSAPQLKFKSYEQHPAAQPTLPN*AVKNY 192
           VSPHG           KLA    +  P+ +F S EQ+P    T P+  V N+
Sbjct: 55  VSPHGSYISPLEAMTVKLADTYSICNPKFQFSS-EQNPRRPLTKPSEGVHNH 105


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 697 CVRKEGSKKWCMIEEYGRRKHVP 629
           CV  EG +KW  ++ + R  HVP
Sbjct: 182 CVGHEGFEKWSQLQNHIREAHVP 204


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 16  SLVVGPLVSPHGYVPPA-KNQKKKKLAGQLDLSAPQLKFKSYEQHPAAQP 162
           S+   P+ +P+G  PP    ++K++L+ + D S   +   S E++P   P
Sbjct: 118 SIYYDPIFNPYGVPPPGMPYREKEELSSETDESVIDIPLPS-EEYPFEDP 166


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 397 ILKCVIGAGKLVHSGFPFHKLGFVFPCTPFPL 302
           I +C+I AG++    F  HKL  +F   P+P+
Sbjct: 734 ISECMILAGRVSSLFFQEHKLPGIFRGQPYPI 765


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 568 FSYANSLSSFSCPFPSHLGSAEHV 639
           FS A+S  +FS P PS    A H+
Sbjct: 211 FSDASSYITFSIPVPSEFSLASHI 234


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -3

Query: 149 GCCSYDLNLSCGAERSSCPASXXXXXXFAGGTYPC 45
           GCCS +    C  E+ SC  S        G +  C
Sbjct: 262 GCCSTEKTSCCSQEKKSCCTSEKPSCCSNGKSTVC 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,437
Number of Sequences: 5004
Number of extensions: 62332
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)