Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6238
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    29   3.9  
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294...    28   9.0  

>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  N*LDS*ISQHHSLSSNRMSNILRHSLLSQ 172
           N LD  + QHH LSSN  S  L HS  SQ
Sbjct: 683 NNLDFEMHQHHRLSSNIPSTSLSHSSCSQ 711


>04_04_1374 -
           33028790-33028951,33029033-33029087,33029402-33029466,
           33029558-33029701,33029825-33029878,33029971-33030220,
           33030340-33030446,33031206-33031216,33032682-33032796,
           33032897-33033005,33033088-33033203,33033288-33033647
          Length = 515

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 96  TARSLSTTA*VQIV*ATSCGTAYSPKLSRKKL*VFKKRNNSSSHPTLKNAS 248
           T  S S TA +++  ATS   A +PK++  +  +   R++SSS  T   AS
Sbjct: 45  TTTSASVTAPLELPGATSASPARNPKINYTRGILHLYRSSSSSSSTASYAS 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,229,605
Number of Sequences: 37544
Number of extensions: 390228
Number of successful extensions: 961
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)