Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6237
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   2.3  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    27   4.0  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    26   5.3  
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.3  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   7.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.3  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   9.3  

>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = -1

Query: 612 LMDRLIFI*VLDSLIIMTINNNVNFKCPGKRASTYNKIIILKHYNRSFWPQMTSHDLKYT 433
           L D +++I   + L+    N   +F+C        NK ++ +H N     ++     +Y 
Sbjct: 125 LADNIVYI---NRLLEKIKNELESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPKSSEYD 181

Query: 432 EFFVINKIS 406
           EF++IN  S
Sbjct: 182 EFYIINYAS 190


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +3

Query: 36  DYAQAREEGTSQHPVIPDIPQKGAEHRPLWNTAHDREPVQDPTVSGTRDRSVL*VGTHQP 215
           DY+++   GTS    + D+ +K   + PL+ +  ++ P  DP++    +R+++       
Sbjct: 558 DYSKSL--GTSSLEQVDDLDEK-LTYTPLYVSLLEKTPFTDPSIPSLVERTIVPAELQNE 614

Query: 216 AKVGGHSMSF 245
             V   S+ F
Sbjct: 615 ITVSSASLRF 624


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 24/85 (28%), Positives = 34/85 (40%)
 Frame = -2

Query: 293 ANAFNTLPWSVIGGALERHRVPPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGS 114
           A  F TL    +G     H V P    ++    + R  +CT    +L    ++  VP  S
Sbjct: 6   AEDFRTLTAVEMGS--RNHEVVP--TNMINQIAKIRGGSCTKSLSVLFMHKLIAKVPHIS 61

Query: 113 VLGPLLWNIGYDWVLRGALLPGLSV 39
             G  L   GYD++   AL    SV
Sbjct: 62  YEGYRLTYAGYDYLALKALSKRASV 86


>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 YLLRKIPCTSNRVTSFEAKTTYCNVL 491
           YL+R + C+S+ VTS    T Y NVL
Sbjct: 38  YLVRTVDCSSSEVTSQPVVTVY-NVL 62


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 152 HRFPVVRGVPQGSVLGPLLWNI 87
           +++ +V G PQGS++ P+L NI
Sbjct: 414 YKYDIV-GTPQGSIVSPILANI 434


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 69  QHPVIPDIPQKGAEHRPLWNTAHDREPVQDPTVSG 173
           Q P +P +P+ G  + P+       +  Q+P V G
Sbjct: 681 QPPAVPVVPEAGQLNEPVVPPLPPHDETQEPQVGG 715


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
 Frame = -2

Query: 302 LDIANAFNTLPWSVIGGALERHRVP-------PYLRRLVGSYLEDRSVTCTGHGGILHRF 144
           LD  NA++  P +  G  +  +R+P       PY+ +     L +++++C    G+   +
Sbjct: 183 LDWVNAYDPQPIADDGLEIMAYRIPYQHPEFWPYVNKTAIRGLFEQTISCLEMSGLTKEW 242

Query: 143 PVVR 132
           PV++
Sbjct: 243 PVLK 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,389
Number of Sequences: 5004
Number of extensions: 81599
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)