Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6237
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 33 0.26
06_03_1310 + 29238644-29240260 33 0.26
02_01_0302 - 2021221-2023305 32 0.59
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 31 1.0
02_02_0257 - 8366452-8367087 31 1.0
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 30 1.8
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351... 30 1.8
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595 30 2.4
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818 30 2.4
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 30 2.4
12_02_0399 - 18600444-18600591,18600626-18601656 29 3.2
12_01_0710 - 6155357-6155708,6156354-6156604,6158874-6158987 29 3.2
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 29 4.2
04_03_0427 + 15818557-15819030 28 7.3
04_03_0417 + 15685164-15685637 28 7.3
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112... 28 9.7
10_08_0604 + 19152363-19152731,19152773-19153514,19153926-191540... 28 9.7
09_02_0252 - 6315834-6315959,6316074-6317018 28 9.7
08_02_0028 - 11371547-11371657,11372326-11372518,11372738-113728... 28 9.7
07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,573... 28 9.7
05_03_0458 + 14280953-14281866,14281964-14282912 28 9.7
05_03_0427 - 13886814-13887935 28 9.7
03_02_0816 + 11487811-11488708,11488835-11489235 28 9.7
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 33.1 bits (72), Expect = 0.26
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYL 219
F +GR + ++ L + +R L + LD A AF+++ W + L P
Sbjct: 9 FLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNW 68
Query: 218 RRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSV 39
+ + L+ HG +G+ QG L P L+ + D VL+ L L +
Sbjct: 69 ISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFILVAD-VLQRLLERNLQI 127
Query: 38 ------------ICYADDTLVAAR 3
I YADDTLV R
Sbjct: 128 RHPIYHDRPCATIQYADDTLVICR 151
>06_03_1310 + 29238644-29240260
Length = 538
Score = 33.1 bits (72), Expect = 0.26
Identities = 33/101 (32%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Frame = +1
Query: 40 TLRPGRRAPLSTQSYPIFHKRGP-STDPCGTPRTTGNRCKIPPCPVHVTD--LSSK*EPT 210
T RPG R PL+ P+ H P T P P ++ +PP P ++ SS T
Sbjct: 369 TRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPPPPPTYSESPKSSMPPST 428
Query: 211 SRRR*GGTL--CRSSAPPITDQGRVLNALAISSDTAKATPP 327
S G SS+PP G VL L T TPP
Sbjct: 429 SPPSSHGASPPSSSSSPPTEHPGYVLPPLTPPPPT--TTPP 467
>02_01_0302 - 2021221-2023305
Length = 694
Score = 31.9 bits (69), Expect = 0.59
Identities = 24/75 (32%), Positives = 34/75 (45%)
Frame = +2
Query: 44 SGPGGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTGARSHRVRYT*PICPLSRNPPAGEG 223
S PGG + PS+ S GG+ TP H + PG+ S+ + P +PP G
Sbjct: 458 SPPGGSSSTTPSYP--SPNGGKPSTP-SHPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHT 514
Query: 224 RGALYVVPAPPLSRT 268
+ P+PP S T
Sbjct: 515 TPS---HPSPPSSST 526
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +1
Query: 214 RRR*GGTLCRSSAPPITDQGRVLNALAISSDTAKATPPLETASSERARTRRIASTVERPS 393
RRR R PP+T +G A A PL T +A RR+ +T +RPS
Sbjct: 38 RRRFAALRWRRGGPPVTARG----------PQATARQPLATMRGSQAAARRLQATAQRPS 87
Query: 394 RKNKG 408
+G
Sbjct: 88 ATARG 92
>02_02_0257 - 8366452-8367087
Length = 211
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/65 (36%), Positives = 25/65 (38%)
Frame = +2
Query: 53 GGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTGARSHRVRYT*PICPLSRNPPAGEGRGA 232
GGG PSH R + PT R G GAR T P PPAGEG G
Sbjct: 96 GGGGDGLPSHLRDGVQPRETPT-----VRGGGGARVA----TADDIPAYEQPPAGEGEGG 146
Query: 233 LYVVP 247
P
Sbjct: 147 AAAAP 151
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 50 PGGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTGARSHRVRYT*PICP 193
P G LS S R+S P+P+ AR GT S+R+ Y P
Sbjct: 54 PDDGELSGKS-ARFSNPDASPPSPLYAAARAGTSGFSYRLSYAADAAP 100
>07_01_0465 +
3513296-3513631,3514386-3514442,3515196-3515306,
3515466-3515552,3515627-3515740,3515850-3516056,
3516291-3516428,3516691-3516852,3516939-3517138,
3517429-3517554,3517644-3517785
Length = 559
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 11 RPTCHLRNRLRSGPGGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTGARSHRV 169
RP+ LR R R+G ++ S +T G AP P E R G G R +V
Sbjct: 19 RPSALLRRRCRAGTAASVSASRSQAAAATTGAAAPAPPETR---GGGDREGQV 68
>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
Length = 216
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 50 PGGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTG 151
PGGG ++ PS + + GG A P PG+G
Sbjct: 42 PGGGEVALPSDSDAALPGGGAGAPGSGARHPGSG 75
>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
Length = 216
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 50 PGGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTG 151
PGGG ++ PS + + GG A P PG+G
Sbjct: 42 PGGGEVALPSDSDAALPGGGAGAPGSGARHPGSG 75
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 253 PPITDQGRVLNALAISSDTAKATP--PLETAS-SERARTRRIASTVERP 390
PP + Q A ++D+ TP P +TAS S+R + +AS V+RP
Sbjct: 116 PPRSQQQTPTTTAAAAADSRSPTPAAPPQTASVSQREEEKSLASVVKRP 164
>12_02_0399 - 18600444-18600591,18600626-18601656
Length = 392
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 24 ICVTDYAQAREEGTSQHPVIPDIPQKGAEHRPLWNTAHDR 143
I V + G S H V+ +IP +GA+ +W T R
Sbjct: 66 IVVQKTKRVDRSGESSHAVVEEIPLEGAQAENVWRTEQGR 105
>12_01_0710 - 6155357-6155708,6156354-6156604,6158874-6158987
Length = 238
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 248 LERHRVPPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYD 78
L++ PP R +G+ L + G ++HR RG+ G+ L LL+ + +D
Sbjct: 37 LQQRAFPPRWRNWLGALLSTSTSQVVLIGILVHRIQHCRGLRLGNPLSTLLFILAFD 93
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 298 SSDTAKATPPLETASSERARTRRIASTVERPSRKNKGYFIYYEK 429
S D ++ P L+ S+ R RR + +P+ K++ FIYY+K
Sbjct: 542 SDDNSQQNPTLQL-STIGGRLRRPEGRIIKPTHKSQTDFIYYKK 584
>04_03_0427 + 15818557-15819030
Length = 157
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 596 ISLSIKCMYFLHGYQVSSQSDAWFSSYN 679
+SL C FLHG++V + W +SY+
Sbjct: 84 LSLLKICEQFLHGHKVMEEDILWLASYH 111
>04_03_0417 + 15685164-15685637
Length = 157
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 596 ISLSIKCMYFLHGYQVSSQSDAWFSSYN 679
+SL C FLHG++V + W +SY+
Sbjct: 84 LSLLKICEQFLHGHKVMEEDILWLASYH 111
>11_04_0137 +
13909204-13909315,13910002-13910999,13911058-13911267,
13911522-13912056,13912154-13912461
Length = 720
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 60 GTSQHPVIPDIPQKGAEHRPLWNTAHDREPVQDPTVSGTRDRSVL*VGTHQPA 218
G S H V+ + P +G + +W T R + V G V+ GT++ A
Sbjct: 85 GESSHAVVEETPLEGGQAENVWRTEQGR---GEEVVEGNTQGEVIVRGTNREA 134
>10_08_0604 +
19152363-19152731,19152773-19153514,19153926-19154005,
19154155-19154487
Length = 507
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 395 REGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERH 237
R+G VDA++R + + GG VS A+ NT+P + AL R+
Sbjct: 63 RDGAVAVDALVRRADAFSDRPAGGGATSIVSGGRAHNINTVPHGPLWVALRRN 115
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 74 PSHTRYSTKGGRAPTPVEHRARPGT 148
PS R ST R P+P HR R T
Sbjct: 46 PSSPRLSTSSSRTPSPRAHRPRAAT 70
>08_02_0028 -
11371547-11371657,11372326-11372518,11372738-11372814,
11373498-11373608,11374533-11374659,11374745-11375022
Length = 298
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -2
Query: 416 IKYPLFFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANA-FNTLPWSVIGGALE- 243
++ L FR+ S V RVR SE + + GV L+ + +++L WS GG LE
Sbjct: 19 VRLTLIFRQLSSRVRNGKRVRGSSERSAPKFGVLFEDVLEECRSWWHSLHWSP-GGVLEC 77
Query: 242 RHRV 231
RH +
Sbjct: 78 RHYI 81
>07_01_0748 -
5735420-5735593,5735735-5735953,5736353-5736532,
5736602-5736739,5736852-5737052,5737859-5737986,
5738114-5738189,5738354-5738503,5738594-5739115,
5739208-5739357,5739559-5739807,5740249-5740440,
5740890-5740937,5741589-5741717,5741821-5741935,
5742044-5742159,5742341-5742415,5742562-5742696
Length = 998
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 250 APPITDQGRVLNALAISSDTAKATPPLETASSERA-RTRRIASTVERPSRKNK 405
A +TD G VL+ +A+ + +TP + +++ RT +I ++V + +NK
Sbjct: 351 AKKVTDAGPVLDMMAVMLENIASTPVVARSTAAAVYRTAQIIASVPNITYQNK 403
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 106 PSTDPCGTPRTTGNRCKIPPCPVHVTDLSSK*E-PTSRRR*GGTLCRSSAPPITDQGRVL 282
P+ P +P T+ + +PP P + SSK PTS + L SS PP D R L
Sbjct: 89 PTPPPPPSPTTSPSASSLPPVPTPRSASSSKCSAPTSAQTPTRFLSSSSPPP--DAPRHL 146
Query: 283 NALA 294
+ +A
Sbjct: 147 SPVA 150
>05_03_0427 - 13886814-13887935
Length = 373
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 216 AKVGGHSMSFQRPPYHGPGQGVKRIGDI 299
A +G HS + P ++GP Q + RIGD+
Sbjct: 221 ASLGVHSKTKLSPRFYGPYQVLGRIGDV 248
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 15 QRVICVTDYAQAREEGTSQHPVIPDIPQKGAEHRPLWNTAHDREPVQDPT 164
+R+I A+ R S P P+ KG+++R + + D +P PT
Sbjct: 186 RRIIAAVRAAEMRAAAASDAPPTPEATGKGSDNRWKDDGSRDVDPSPSPT 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,005,827
Number of Sequences: 37544
Number of extensions: 679345
Number of successful extensions: 1995
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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