Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6237
(786 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 99 3e-21
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 70 4e-12
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 56 7e-08
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 55 1e-07
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 54 2e-07
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 54 3e-07
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 54 3e-07
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 53 4e-07
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 53 4e-07
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 53 4e-07
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 53 4e-07
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 53 4e-07
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 53 4e-07
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 53 4e-07
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 53 4e-07
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 53 4e-07
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 50 3e-06
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 49 6e-06
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 49 6e-06
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 49 6e-06
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 49 6e-06
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 48 1e-05
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 48 1e-05
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 48 1e-05
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 47 3e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 43 5e-04
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 42 0.001
BT004481-1|AAO42645.1| 771|Drosophila melanogaster LD34250p pro... 32 0.77
AE014298-1948|AAF48305.1| 789|Drosophila melanogaster CG9941-PA... 32 0.77
X89601-1|CAA61760.1| 665|Drosophila melanogaster CNG channel pr... 32 1.0
AE013599-2229|AAF58033.1| 665|Drosophila melanogaster CG7779-PA... 32 1.0
M61157-1|AAA28495.1| 1174|Drosophila melanogaster potassium chan... 31 1.8
AE014298-2086|AAF48410.1| 1174|Drosophila melanogaster CG10952-P... 31 1.8
AE014298-2085|ABI30980.1| 1270|Drosophila melanogaster CG10952-P... 31 1.8
AE014297-2585|AAF55598.3| 699|Drosophila melanogaster CG18208-P... 31 2.4
AY075499-1|AAL68309.1| 667|Drosophila melanogaster RE51073p pro... 29 7.2
AE014134-110|AAF51492.1| 667|Drosophila melanogaster CG4133-PA ... 29 7.2
BT029103-1|ABJ17036.1| 823|Drosophila melanogaster IP14290p pro... 29 9.5
AY071115-1|AAL48737.1| 497|Drosophila melanogaster RE16861p pro... 29 9.5
AY061199-1|AAL28747.1| 430|Drosophila melanogaster LD15527p pro... 29 9.5
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA... 29 9.5
AE014297-3530|AAF56285.2| 457|Drosophila melanogaster CG5746-PB... 29 9.5
AE014297-3529|AAF56284.2| 457|Drosophila melanogaster CG5746-PA... 29 9.5
AE014134-780|AAN10337.1| 497|Drosophila melanogaster CG15626-PB... 29 9.5
AE014134-779|AAF50975.1| 497|Drosophila melanogaster CG15626-PA... 29 9.5
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 99 bits (238), Expect = 3e-21
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 8/139 (5%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSR----GG---VALAVSLDIANAFNTLPWSVIGGALER 240
FR+G+ST+DA+ V + +A+ GG ++LD+ NAFNT W +I GA+
Sbjct: 517 FRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGAMRN 576
Query: 239 HRVPPYLRRLVGSYLEDRSVT-CTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRG 63
VP Y+R ++G+Y DR + T G H+ V GVPQGSVLGP+LWNI YD +L
Sbjct: 577 LGVPDYIRGVIGNYFRDRVLWYVTEDGPRSHQ--VSAGVPQGSVLGPILWNIMYDGILSI 634
Query: 62 ALLPGLSVICYADDTLVAA 6
+ G+ + C+ADD + A
Sbjct: 635 SKPRGVELHCFADDVAITA 653
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 69.7 bits (163), Expect = 4e-12
Identities = 42/96 (43%), Positives = 53/96 (55%)
Frame = -2
Query: 308 VSLDIANAFNTLPWSVIGGALERHRVPPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRG 129
V+LDI N FNT +S P YL R + SY +R + C G+ R V G
Sbjct: 2 VTLDIRNDFNTANFSD----------PAYLVRFIRSYSSNRVLPCESSEGVF-RHQVTGG 50
Query: 128 VPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADD 21
VPQGSVLGPLLWN YD +LR L+ ++ +ADD
Sbjct: 51 VPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADD 86
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 55.6 bits (128), Expect = 7e-08
Identities = 48/135 (35%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALE-RHRVPPY 222
FR G TV+ + RV A ++ LDI AF+ + W IG L+ + +P
Sbjct: 551 FRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRV-WH-IGLQLKIKQTLPAP 608
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNI-GYDWVLRGALLPGL 45
L+ SYLE R H I V GVPQGSVLGPLL+ + +D L G
Sbjct: 609 YFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGK 668
Query: 44 SVIC-YADDTLVAAR 3
S++ +ADD V R
Sbjct: 669 SMLATFADDVCVTYR 683
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 55.2 bits (127), Expect = 1e-07
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPY- 222
FR+ T I RV EA R AV LDI+ AF+ + W G L+ ++ PY
Sbjct: 608 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRV-WHE-GLLLKLAKILPYN 665
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVV-RGVPQGSVLGPLLWNI-----GYDWVLRGA 60
L ++ SYL +R+ G R + GVPQGS LGPLL++I ++ R +
Sbjct: 666 LYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPS 725
Query: 59 LLPGLSVICYADDTLV 12
+ + YADDT+V
Sbjct: 726 PTQRIMLSTYADDTIV 741
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 54.4 bits (125), Expect = 2e-07
Identities = 44/130 (33%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHR-VPPY 222
FR+GR DA V+ S S L +D AF+ + WS AL R +
Sbjct: 547 FRQGRCVEDAWRHVK--SSVGASAAQYVLGTFVDFKGAFDNVEWSA---ALSRLADLGCR 601
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLS 42
L S+ R G + PV RG PQGS+ GP +W+I D VL L P
Sbjct: 602 EMGLWQSFFSGRRAVIRSSSGTVE-VPVTRGCPQGSISGPFIWDILMD-VLLQRLQPYCQ 659
Query: 41 VICYADDTLV 12
+ YADD L+
Sbjct: 660 LSAYADDLLL 669
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 53.6 bits (123), Expect = 3e-07
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPY- 222
FR+ + I RV EA R AV LDI+ AF+ + W G L+ ++ PY
Sbjct: 596 FRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRV-WHE-GLLLKLAKILPYN 653
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVV-RGVPQGSVLGPLLWNI-----GYDWVLRGA 60
L ++ SYL +R+ G R + GVPQGS LGPLL++I ++ R +
Sbjct: 654 LYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPS 713
Query: 59 LLPGLSVICYADDTLV 12
+ + YADDT+V
Sbjct: 714 PTERIMLSTYADDTIV 729
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 53.6 bits (123), Expect = 3e-07
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRV--PP 225
FRE T++ + R+ A AV LD++ AF+ + W + G + + ++ P
Sbjct: 549 FRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKV-W--LDGLMFKIKISLPE 605
Query: 224 YLRRLVGSYLEDR--SVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLP 51
+L+ SYL DR +V C +H + GVPQGSVLGP L+ I +
Sbjct: 606 STHKLLKSYLYDRKFAVRCNTATSTVHT--IEAGVPQGSVLGPTLYLI---YTADIPTNS 660
Query: 50 GLSVICYADDTLVAAR 3
L+V +ADDT + +R
Sbjct: 661 RLTVSTFADDTAILSR 676
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 53.2 bits (122), Expect = 4e-07
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPY- 222
FR+ T I RV EA R AV LDI+ AF+ + W G L+ ++ PY
Sbjct: 480 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRV-WHE-GLLLKLAKILPYN 537
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVV-RGVPQGSVLGPLLWNI-GYDWVLRGALLPG 48
L ++ SYL +R+ G R + GVPQGS LGP+L++I D L P
Sbjct: 538 LYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPS 597
Query: 47 ----LSVICYADDTLV 12
+ + YADDT+V
Sbjct: 598 PTERIMLSTYADDTIV 613
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 53.2 bits (122), Expect = 4e-07
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Frame = -2
Query: 413 KYPLFFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHR 234
K+ FR T + + RV + EA+ A+ LDI AF+ + W G + R
Sbjct: 548 KFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRV-WHP-GLLYKAKR 605
Query: 233 V-PPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNI 87
+ PP L +V S+LE+R+ + G P+ GVPQGSVLGP L+++
Sbjct: 606 LFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSV 655
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 53.2 bits (122), Expect = 4e-07
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPY- 222
FR+ T I RV EA R AV LDI+ AF+ + W G L+ ++ PY
Sbjct: 596 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRV-WHE-GLLLKLAKILPYN 653
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVV-RGVPQGSVLGPLLWNI-GYDWVLRGALLPG 48
L ++ SYL +R+ G R + GVPQGS LGP+L++I D L P
Sbjct: 654 LYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPS 713
Query: 47 ----LSVICYADDTLV 12
+ + YADDT+V
Sbjct: 714 PTERIMLSTYADDTIV 729
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 53.2 bits (122), Expect = 4e-07
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAV-SRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPY 222
FR G +T+ L++R +E++ S+ V L V+LDI AF+T+ + L+ P Y
Sbjct: 576 FRNGLNTILPTLKLRNYIKESIQSKQSVGL-VTLDIEAAFDTVWHDGLLHKLKMIGTPIY 634
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNI 87
L ++V ++L R + + R + GVPQGSVLGP L+NI
Sbjct: 635 LIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNI 679
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 53.2 bits (122), Expect = 4e-07
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Frame = -2
Query: 413 KYPLFFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHR 234
K+ FR T + + RV + EA+ A+ LDI AF+ + W G + R
Sbjct: 350 KFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRV-WHP-GLLYKAKR 407
Query: 233 V-PPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNI 87
+ PP L +V S+LE+R+ + G P+ GVPQGSVLGP L+++
Sbjct: 408 LFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSV 457
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 53.2 bits (122), Expect = 4e-07
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPY- 222
FR+ T I RV EA R AV LDI+ AF+ + W G L+ ++ PY
Sbjct: 596 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRV-WHE-GLLLKLAKILPYN 653
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVV-RGVPQGSVLGPLLWNI-GYDWVLRGALLPG 48
L ++ SYL +R+ G R + GVPQGS LGP+L++I D L P
Sbjct: 654 LYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPS 713
Query: 47 ----LSVICYADDTLV 12
+ + YADDT+V
Sbjct: 714 PTERIMLSTYADDTIV 729
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 53.2 bits (122), Expect = 4e-07
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPY- 222
FR+ T I RV EA R AV LDI+ AF+ + W G L+ ++ PY
Sbjct: 558 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRV-WHE-GLLLKLAKILPYN 615
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVV-RGVPQGSVLGPLLWNI-GYDWVLRGALLPG 48
L ++ SYL +R+ G R + GVPQGS LGP+L++I D L P
Sbjct: 616 LYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPS 675
Query: 47 ----LSVICYADDTLV 12
+ + YADDT+V
Sbjct: 676 PTERIMLSTYADDTIV 691
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 53.2 bits (122), Expect = 4e-07
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPY- 222
FR+ T I RV EA R AV LDI+ AF+ + W G L+ ++ PY
Sbjct: 596 FRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRV-WHE-GLLLKLAKILPYN 653
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVV-RGVPQGSVLGPLLWNI-GYDWVLRGALLPG 48
L ++ SYL +R+ G R + GVPQGS LGP+L++I D L P
Sbjct: 654 LYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPS 713
Query: 47 ----LSVICYADDTLV 12
+ + YADDT+V
Sbjct: 714 PTERIMLSTYADDTIV 729
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 53.2 bits (122), Expect = 4e-07
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAV-SRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPY 222
FR G +T+ L++R +E++ S+ V L V+LDI AF+T+ + L+ P Y
Sbjct: 524 FRNGLNTILPTLKLRNYIKESIQSKQSVGL-VTLDIEAAFDTVWHDGLLHKLKMIGTPIY 582
Query: 221 LRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNI 87
L ++V ++L R + + R + GVPQGSVLGP L+NI
Sbjct: 583 LIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNI 627
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 50.4 bits (115), Expect = 3e-06
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALER--HRVPP 225
FRE T++ + R+ + A A+ LD+A AF+ + W + G L + +P
Sbjct: 547 FREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRV-W--LDGLLFKIIKLLPQ 603
Query: 224 YLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGL 45
+L+ SYL +R + GVPQGSVLGP+L+ + + + L
Sbjct: 604 NTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTL---YTADFPIDYNL 660
Query: 44 SVICYADDTLVAAR 3
+ +ADDT + +R
Sbjct: 661 TTSTFADDTAILSR 674
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 49.2 bits (112), Expect = 6e-06
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYL 219
FR+ + RV +A V A LDI AF+ + + L R +P YL
Sbjct: 152 FRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR-LIPRYL 210
Query: 218 RRLVGSYLEDRSVTCTGHGGILHRFPVVR-GVPQGSVLGPLLWNI 87
L+ +YL +R+ + G R +R GVPQGS+LGP+L++I
Sbjct: 211 FDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSI 255
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 49.2 bits (112), Expect = 6e-06
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYL 219
FR+ + RV +A V A LDI AF+ + + L R +P YL
Sbjct: 599 FRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR-LIPRYL 657
Query: 218 RRLVGSYLEDRSVTCTGHGGILHRFPVVR-GVPQGSVLGPLLWNI 87
L+ +YL +R+ + G R +R GVPQGS+LGP+L++I
Sbjct: 658 FDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSI 702
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 49.2 bits (112), Expect = 6e-06
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYL 219
FR+ + RV +A V A LDI AF+ + + L R +P YL
Sbjct: 599 FRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR-LIPRYL 657
Query: 218 RRLVGSYLEDRSVTCTGHGGILHRFPVVR-GVPQGSVLGPLLWNI 87
L+ +YL +R+ + G R +R GVPQGS+LGP+L++I
Sbjct: 658 FDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSI 702
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 49.2 bits (112), Expect = 6e-06
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYL 219
FR+ + RV +A V A LDI AF+ + + L R +P YL
Sbjct: 599 FRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR-LIPRYL 657
Query: 218 RRLVGSYLEDRSVTCTGHGGILHRFPVVR-GVPQGSVLGPLLWNI 87
L+ +YL +R+ + G R +R GVPQGS+LGP+L++I
Sbjct: 658 FDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSI 702
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 48.4 bits (110), Expect = 1e-05
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Frame = -2
Query: 410 YPLFFREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALER--H 237
Y F ++ + R+ A A+ LD+A AF+ + W + G + +
Sbjct: 84 YQFDFPAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRV-W--LDGLMFKIIQ 140
Query: 236 RVPPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGAL 57
+P + +L+ SYL+ R F + GVPQGSVLGP+L+ + +
Sbjct: 141 LLPQNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILYTL---YTADIPT 197
Query: 56 LPGLSVICYADDTLVAAR 3
L++ +ADDT + +R
Sbjct: 198 NYQLTIFTFADDTAIISR 215
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 48.0 bits (109), Expect = 1e-05
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALER--HRVPP 225
FRE T++ + R+ + A A+ LD+A AF+ + W + G L + +P
Sbjct: 547 FREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRV-W--LDGLLFKIIKLLPQ 603
Query: 224 YLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGL 45
+L+ SYL + + GVPQGSVLGP+L+ + + + L
Sbjct: 604 NTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTL---YTADFPIDYNL 660
Query: 44 SVICYADDTLVAAR 3
+ +ADDT + +R
Sbjct: 661 TTSTFADDTAILSR 674
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 48.0 bits (109), Expect = 1e-05
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYL 219
F+ ST+DA+LR++ + A+S ++ D AF+ + + LER + P L
Sbjct: 551 FKSNHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVLCRLERWGIGPRL 610
Query: 218 RRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALL-PGLS 42
L+ +++ +RS + + + G+PQGS L +L+ I + + +
Sbjct: 611 YNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIVTRHKDIY 670
Query: 41 VICYADDTLV 12
+ YADD ++
Sbjct: 671 ISLYADDAII 680
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 46.8 bits (106), Expect = 3e-05
Identities = 33/104 (31%), Positives = 52/104 (50%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYL 219
FR+G STV+ + R+ +A AV +D+ AF+ + + +++ PY
Sbjct: 552 FRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWHDGLISKVKKLFPAPYY 611
Query: 218 RRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNI 87
++ SYLEDR + GVPQGSVLGPLL+++
Sbjct: 612 G-VLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSV 654
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 42.7 bits (96), Expect = 5e-04
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = -2
Query: 398 FREGRSTVDAILRVRALSEEAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYL 219
F++G+ST D +L V L ++ + V+LD + AF+ + I L+ + P +
Sbjct: 546 FKKGKSTSDCLLYVDYLITKSKMHTSL---VTLDFSRAFDRVGVHSIIQQLQEWKTGPKI 602
Query: 218 RRLVGSYLEDRSVTCTGHGGILHRFPVVRGVPQGSVLGPLLWNIGYDWVLR-GALLPGLS 42
+ + +++ +R +T P+ G+PQGS + +L+ I ++ + +L +
Sbjct: 603 IKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKLSNIISLHKEIK 662
Query: 41 VICYADD 21
YADD
Sbjct: 663 FNAYADD 669
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 41.9 bits (94), Expect = 0.001
Identities = 25/80 (31%), Positives = 38/80 (47%)
Frame = -2
Query: 305 SLDIANAFNTLPWSVIGGALERHRVPPYLRRLVGSYLEDRSVTCTGHGGILHRFPVVRGV 126
+LD++ AF++L + I L + P V + E + G G F RGV
Sbjct: 480 NLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGV 539
Query: 125 PQGSVLGPLLWNIGYDWVLR 66
QG L P+L+N+ D +LR
Sbjct: 540 KQGDPLSPILFNLVMDRLLR 559
>BT004481-1|AAO42645.1| 771|Drosophila melanogaster LD34250p
protein.
Length = 771
Score = 32.3 bits (70), Expect = 0.77
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 241 RSSAPPITDQGRVLNALAISSDTAKATPPLETASSERARTRRIAST 378
R+S +TD + A ++S KAT P++++S R + ++ AST
Sbjct: 402 RNSEHDVTDSAATVAASTMTSADIKATSPIKSSSQRRPKIKKNAST 447
>AE014298-1948|AAF48305.1| 789|Drosophila melanogaster CG9941-PA
protein.
Length = 789
Score = 32.3 bits (70), Expect = 0.77
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 241 RSSAPPITDQGRVLNALAISSDTAKATPPLETASSERARTRRIAST 378
R+S +TD + A ++S KAT P++++S R + ++ AST
Sbjct: 420 RNSEHDVTDSAATVAASTMTSADIKATSPIKSSSQRRPKIKKNAST 465
>X89601-1|CAA61760.1| 665|Drosophila melanogaster CNG channel
protein.
Length = 665
Score = 31.9 bits (69), Expect = 1.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 614 CMYFLHGYQVSSQSDAWFSSYNGT 685
CMYF Y++ SD+W + NGT
Sbjct: 267 CMYFAISYEIGFSSDSWVYNLNGT 290
>AE013599-2229|AAF58033.1| 665|Drosophila melanogaster CG7779-PA
protein.
Length = 665
Score = 31.9 bits (69), Expect = 1.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 614 CMYFLHGYQVSSQSDAWFSSYNGT 685
CMYF Y++ SD+W + NGT
Sbjct: 267 CMYFAISYEIGFSSDSWVYNLNGT 290
>M61157-1|AAA28495.1| 1174|Drosophila melanogaster potassium channel
protein protein.
Length = 1174
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 247 SAPPITDQGRVLNALAISSDTAKATPPLETASSERA 354
S+PP D V+ A+SS T +PP+ T SS A
Sbjct: 796 SSPPSRDSRVVIEGAAVSSATVGPSPPVATTSSAAA 831
>AE014298-2086|AAF48410.1| 1174|Drosophila melanogaster CG10952-PA,
isoform A protein.
Length = 1174
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 247 SAPPITDQGRVLNALAISSDTAKATPPLETASSERA 354
S+PP D V+ A+SS T +PP+ T SS A
Sbjct: 796 SSPPSRDSRVVIEGAAVSSATVGPSPPVATTSSAAA 831
>AE014298-2085|ABI30980.1| 1270|Drosophila melanogaster CG10952-PB,
isoform B protein.
Length = 1270
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 247 SAPPITDQGRVLNALAISSDTAKATPPLETASSERA 354
S+PP D V+ A+SS T +PP+ T SS A
Sbjct: 892 SSPPSRDSRVVIEGAAVSSATVGPSPPVATTSSAAA 927
>AE014297-2585|AAF55598.3| 699|Drosophila melanogaster CG18208-PA
protein.
Length = 699
Score = 30.7 bits (66), Expect = 2.4
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 542 LTLLFIVIIIKESNTHINISLSIKCMYFLHGYQVSSQSDAWFSSYNGTFRK 694
L F+ I++ ++H NI S + F GY S+ + A ++ +N FR+
Sbjct: 641 LPFFFLYILVPACSSHCNIPESAFAVAFWLGYMNSALNPAIYTIFNKDFRR 691
>AY075499-1|AAL68309.1| 667|Drosophila melanogaster RE51073p
protein.
Length = 667
Score = 29.1 bits (62), Expect = 7.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 264 GPGQGVKRIGDIERHRQSHPTP 329
G GQG GD +RH +HP P
Sbjct: 594 GSGQGAGAPGDTQRHYNTHPRP 615
>AE014134-110|AAF51492.1| 667|Drosophila melanogaster CG4133-PA
protein.
Length = 667
Score = 29.1 bits (62), Expect = 7.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 264 GPGQGVKRIGDIERHRQSHPTP 329
G GQG GD +RH +HP P
Sbjct: 594 GSGQGAGAPGDTQRHYNTHPRP 615
>BT029103-1|ABJ17036.1| 823|Drosophila melanogaster IP14290p
protein.
Length = 823
Score = 28.7 bits (61), Expect = 9.5
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 244 NDIECPPTFAGWWVPT*RTDRSRVPDTVGSCTGSRSCAVFHRGR 113
ND PP+ AG T R+ R R P VG+ GS+ V GR
Sbjct: 441 NDDPPPPSNAGG---TPRSQRLRTPSYVGAIAGSKDQLVVRAGR 481
>AY071115-1|AAL48737.1| 497|Drosophila melanogaster RE16861p
protein.
Length = 497
Score = 28.7 bits (61), Expect = 9.5
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +3
Query: 93 PQKGAEHRPLWNTAHDREPVQDPTVSGTRDRSVL*VGTHQPAKVGGHSMSFQRPPYHGPG 272
PQ G HR D V+D + S T + + +H+P G S+ P P
Sbjct: 414 PQLGHPHRYAQAPVFDAGRVRDSSASSTHSSNAPSINSHRPPPYYGSSLRGAAPLVPTPV 473
Query: 273 QGVKR 287
G R
Sbjct: 474 PGAPR 478
>AY061199-1|AAL28747.1| 430|Drosophila melanogaster LD15527p
protein.
Length = 430
Score = 28.7 bits (61), Expect = 9.5
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +2
Query: 32 NRLRSGPGGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTGARSHRVRYT*PICPLSRNPP 211
N +G GGG + SH+ + G P EH + P G R Y L R P
Sbjct: 173 NSHMNGSGGGSMYGGSHSHHGNSMGGGPGS-EHGSMPRRGGPRGRGGYN---QALKRGAP 228
Query: 212 AGEG 223
G G
Sbjct: 229 GGPG 232
>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
protein.
Length = 1958
Score = 28.7 bits (61), Expect = 9.5
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 244 NDIECPPTFAGWWVPT*RTDRSRVPDTVGSCTGSRSCAVFHRGR 113
ND PP+ AG T R+ R R P VG+ GS+ V GR
Sbjct: 407 NDDPPPPSNAGG---TPRSQRLRTPSYVGAIAGSKDQLVVRAGR 447
>AE014297-3530|AAF56285.2| 457|Drosophila melanogaster CG5746-PB,
isoform B protein.
Length = 457
Score = 28.7 bits (61), Expect = 9.5
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +2
Query: 32 NRLRSGPGGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTGARSHRVRYT*PICPLSRNPP 211
N +G GGG + SH+ + G P EH + P G R Y L R P
Sbjct: 200 NSHMNGSGGGSMYGGSHSHHGNSMGGGPGS-EHGSMPRRGGPRGRGGYN---QALKRGAP 255
Query: 212 AGEG 223
G G
Sbjct: 256 GGPG 259
>AE014297-3529|AAF56284.2| 457|Drosophila melanogaster CG5746-PA,
isoform A protein.
Length = 457
Score = 28.7 bits (61), Expect = 9.5
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +2
Query: 32 NRLRSGPGGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTGARSHRVRYT*PICPLSRNPP 211
N +G GGG + SH+ + G P EH + P G R Y L R P
Sbjct: 200 NSHMNGSGGGSMYGGSHSHHGNSMGGGPGS-EHGSMPRRGGPRGRGGYN---QALKRGAP 255
Query: 212 AGEG 223
G G
Sbjct: 256 GGPG 259
>AE014134-780|AAN10337.1| 497|Drosophila melanogaster CG15626-PB,
isoform B protein.
Length = 497
Score = 28.7 bits (61), Expect = 9.5
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +3
Query: 93 PQKGAEHRPLWNTAHDREPVQDPTVSGTRDRSVL*VGTHQPAKVGGHSMSFQRPPYHGPG 272
PQ G HR D V+D + S T + + +H+P G S+ P P
Sbjct: 414 PQLGHPHRYAQAPVFDAGRVRDSSASSTHSSNAPSINSHRPPPYYGSSLRGAAPLVPTPV 473
Query: 273 QGVKR 287
G R
Sbjct: 474 PGAPR 478
>AE014134-779|AAF50975.1| 497|Drosophila melanogaster CG15626-PA,
isoform A protein.
Length = 497
Score = 28.7 bits (61), Expect = 9.5
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +3
Query: 93 PQKGAEHRPLWNTAHDREPVQDPTVSGTRDRSVL*VGTHQPAKVGGHSMSFQRPPYHGPG 272
PQ G HR D V+D + S T + + +H+P G S+ P P
Sbjct: 414 PQLGHPHRYAQAPVFDAGRVRDSSASSTHSSNAPSINSHRPPPYYGSSLRGAAPLVPTPV 473
Query: 273 QGVKR 287
G R
Sbjct: 474 PGAPR 478
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,819,790
Number of Sequences: 53049
Number of extensions: 1076415
Number of successful extensions: 3073
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 2754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3050
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -