Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6237
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    41   0.001
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    40   0.002
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    40   0.003
AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine r...    34   0.10 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    33   0.31 
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    33   0.31 
AF024503-17|AAG24085.1|  354|Caenorhabditis elegans Hypothetical...    31   1.2  
Z81592-8|CAB04730.1|  365|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    29   3.8  
AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = -2

Query: 317 ALAVSLDIANAFNTLPWSVI-GGALERHRVPPYLRRLVGSYLEDRSVTCTGHGGILHRF- 144
           A+   LD+  AF+ +P   +    +E   + P ++  +G+YL  R +  T H     ++ 
Sbjct: 469 AIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIR-TSHDNHWSKWH 527

Query: 143 PVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVAAR 3
            ++ GVPQGSV+ P L+     ++          +I YADD  + AR
Sbjct: 528 TLLGGVPQGSVISPNLFTF---YLKDMPTQQDTMLISYADDMSIIAR 571


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = -2

Query: 146  FPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLV 12
            +P+  GVPQGSV GPLL+ +  + +L   L P +++ C+ADD  +
Sbjct: 875  YPISSGVPQGSVSGPLLFILFINNLLID-LAPTINISCFADDVKI 918


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = -2

Query: 341 EAVSRGGVALAVSLDIANAFNTLPWSVIGGALERHRVPPYLRRLVGSYLEDRSVTCTGHG 162
           +++  G     + LD + AF+ LP  ++   L   R    L   V  +L +RS       
Sbjct: 6   KSIDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQ 65

Query: 161 GILHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVIC--YADDTLVAA 6
            +  R     GVPQG+VL PLL+ I  + +   ++LP   V C  +ADDT + A
Sbjct: 66  TLSSRKFATCGVPQGAVLSPLLFGIYVNDI--SSILPE-KVACKQFADDTKLYA 116


>AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 61 protein.
          Length = 312

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 566 IIKESNTHI---NISLSIKCMYFLHGYQVSSQSDAWFSSYNGTFRKITVNLPSLVIKFCH 736
           IIK S T +   N++     +YF+  + +   +   F+ ++ T+ KIT  L  + + +C 
Sbjct: 175 IIKHSGTIVKATNVTAIFSVIYFIVIFSLGVVTSCMFTKFSSTYEKITKKLTKIALTYCF 234

Query: 737 MF 742
           ++
Sbjct: 235 LY 236


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
 Frame = +1

Query: 85  PIFHKRGPSTD--PCGTPRTTGNRCKIPPCPVHVTDLSSK*EPTSRRR*GGTLCRSSAP- 255
           P   +R PS    P   P+   +R K PP     +  +SK  P  RRR   +  RS AP 
Sbjct: 344 PARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPK 403

Query: 256 -PITDQGRVLNALAISSDTAKATPPLETASSERARTRRIASTVERPSRKNK 405
             I    R  +  A  S  A       + S    R RR  S  + P+ + +
Sbjct: 404 REIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRR 454



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 55  RRAPLSTQSYP-IFHKRGPSTDPCGTPRTTGNRCKIPPCPV--HVTDLSSK*EPTSRRR* 225
           RR+P +++S P    +R PS      P+   +R K PP P     +  +SK  P + +R 
Sbjct: 305 RRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKR- 363

Query: 226 GGTLCRSSAPP 258
                RS +PP
Sbjct: 364 --AKSRSKSPP 372


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -2

Query: 143 PVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLV 12
           P+  GVP+GSV GP L+ I  + +L  ++ P +S   +ADD  V
Sbjct: 52  PISSGVPKGSVSGPFLFLIFINSLLL-SVPPSISCSAFADDLKV 94


>AF024503-17|AAG24085.1|  354|Caenorhabditis elegans Hypothetical
           protein F31F4.1 protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +2

Query: 476 LL*CFSIIILLYVLARFPGHLKLTLLFIVIIIKESNTH-INISL-SIKCMYFLHGYQVSS 649
           LL CF  + LL+ LA F    +L +  +V++ + ++    +++L S++C   +HGYQ  +
Sbjct: 20  LLICF-FVFLLFHLAGFQNGKRLEIGILVVLNENTDARQYDLALKSVECYAKIHGYQFIT 78

Query: 650 QSD 658
             D
Sbjct: 79  ARD 81


>Z81592-8|CAB04730.1|  365|Caenorhabditis elegans Hypothetical
           protein T16G1.8 protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/72 (33%), Positives = 32/72 (44%)
 Frame = +2

Query: 44  SGPGGGHLSAPSHTRYSTKGGRAPTPVEHRARPGTGARSHRVRYT*PICPLSRNPPAGEG 223
           S P   + SAP+   YST    AP P+   + P   A      Y+  + P S + P    
Sbjct: 84  SNPIPSYASAPALPSYSTAYSMAPPPLILPSSPSYVAPVSAPSYS--LTP-SISIPGPFP 140

Query: 224 RGALYVVPAPPL 259
              LYV PAPP+
Sbjct: 141 PAPLYVPPAPPM 152


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 493 YYYFIICTCPLPWAFKINIIIYCHYY*GVQHSY 591
           +++F+     +PWAF + I++   YY  V HS+
Sbjct: 139 FWWFVFAIFAIPWAFAVPILVGRSYY--VYHSH 169


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 493 YYYFIICTCPLPWAFKINIIIYCHYY*GVQHSY 591
           +++F+     +PWAF + I++   YY  V HS+
Sbjct: 139 FWWFVFAIFAIPWAFAVPILVGRSYY--VYHSH 169


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = +3

Query: 405 RIFYLLRKIPCTSNRVTSFEAKTTYCNVLVLLFYYMYLPASL 530
           ++F ++ ++  T  ++ S+E  T++ ++L  LF+ + LP SL
Sbjct: 119 QVFMVIERLLATI-KIESYEHNTSFWHILAYLFFCIVLPLSL 159


>AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical
           protein M04F3.5 protein.
          Length = 652

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 232 TLCRSSAPPITDQGRVLNALA--ISSDTAKATPPLETASSERA 354
           T C  + P IT  G + ++ +  ISS T  + PPL+  +SE++
Sbjct: 281 TSCTRNLPLITGNGNMESSASSVISSSTRYSKPPLQRRNSEKS 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,259,318
Number of Sequences: 27780
Number of extensions: 516172
Number of successful extensions: 1298
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)