Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6237
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   1.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   7.4  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   9.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   9.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   9.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   9.8  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = -2

Query: 323 GVALAVSLDIANAFNTLPWSVIGGALERHR 234
           G  + + +D+   + ++ W ++G   ERH+
Sbjct: 183 GDKVEIGIDLREYYPSVEWDILGVPAERHK 212


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 600 VYPLSACIFYMDT 638
           VYPL+ C++Y  T
Sbjct: 297 VYPLTGCLYYFST 309


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 93  PQKGAEHRPLWNTAHDR 143
           PQ  ++   LWN A DR
Sbjct: 29  PQNRSQEEDLWNLATDR 45


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 585 VLDSLIIMTINNNVNFKCPGKRASTYNKIIILKHYNRSFW 466
           ++ SL   TI+NN N+K        YN      +YN+  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNKYNYNN----NNYNKKLY 116


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 585 VLDSLIIMTINNNVNFK 535
           ++ SL+  TI+NN N+K
Sbjct: 303 IISSLLNNTIHNNNNYK 319


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 585 VLDSLIIMTINNNVNFK 535
           ++ SL+  TI+NN N+K
Sbjct: 314 IISSLLNNTIHNNNNYK 330


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 585 VLDSLIIMTINNNVNFK 535
           ++ SL+  TI+NN N+K
Sbjct: 314 IISSLLNNTIHNNNNYK 330


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 585 VLDSLIIMTINNNVNFK 535
           ++ SL+  TI+NN N+K
Sbjct: 303 IISSLLNNTIHNNNNYK 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,253
Number of Sequences: 438
Number of extensions: 7139
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)