Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6234
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   3.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   7.9  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 361 VILNFID*YVAFPMYGL*LSILRSFFLG 444
           +IL F+D Y+ + ++    S+LRSF LG
Sbjct: 750 LILFFLDTYLWYIIFNTIFSVLRSFVLG 777


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 352 ISCVILNFID*YVAFPMYGL*LSILRSFFLG 444
           ++ ++L F+D Y+ + +     S+ RSFFLG
Sbjct: 717 VTDLVLFFLDTYLWYILVNTVFSVARSFFLG 747


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 520 NPPILLERWSSPVHPGSLTQR*NFTHPKKMTAKSTIKV 407
           NP  L  R+ S  HP +++Q  N   P+ +   S   V
Sbjct: 134 NPAFLPSRYDSSFHPYTISQAANQPFPQHLLGNSNAGV 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,155
Number of Sequences: 5004
Number of extensions: 45063
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)