Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6234
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z22177-11|CAA80144.2|  240|Caenorhabditis elegans Hypothetical p...    27   7.2  
AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical
           protein K02F6.3 protein.
          Length = 839

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 175 DELTAHLVVEWLLEPIDIYNVNLLPTLRYKF*GLNIVTTGAPPFKPK 35
           + L     +EW     D   ++ +P L+ K   L I+ +GAP F+ K
Sbjct: 165 NSLNVFFELEWKSADADKKIIDSIPNLQEKLDPLGIILSGAPNFETK 211


>Z22177-11|CAA80144.2|  240|Caenorhabditis elegans Hypothetical
           protein ZK512.1 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 374 SLINTLPFLCTDFDCRFCGHFFW-VSEVSPLCQRPRMHR 487
           SL     F C +FD  F G + W  +  S L +R ++HR
Sbjct: 37  SLEGEKKFFCGEFDSSFTGRYHWRFNGSSILPERTQIHR 75


>AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical
           protein Y119C1A.1 protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 526 LPNPPILLERWSSPVHPGSLTQR*NFTHPK 437
           +P+ P+LL     PVHPG  T    F++P+
Sbjct: 1   MPHQPVLLNPPYPPVHPGFGTGFPQFSYPQ 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,250,496
Number of Sequences: 27780
Number of extensions: 262135
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)