Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6234
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 123 MSIGSSNHSTTRWAVSS 173
           +   +SN+STTRW  +S
Sbjct: 769 LQCATSNYSTTRWPATS 785


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 541 PLEQFLPNPPI-LLERWSSPVHPGSLTQR*NFTHP 440
           PL Q  P  PI L E+W S +  G+ T +    HP
Sbjct: 435 PLMQ--PKQPIKLFEQWKSILESGTTTLQTRTMHP 467


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 378 NEVQNDA*NPFINITIESIISGEPDDRCR 292
           + + N   N F  +T+E I++  P DR R
Sbjct: 259 HSILNRTNNIFELVTVEPILTERPSDRQR 287


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 169 LTAHLVVEWLLEPIDI 122
           L  H+   W++EP D+
Sbjct: 700 LVVHVPPRWIVEPTDV 715


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 464 TKVKLHSPKKNDRKIDNQSPYI 399
           T VKL+ PKK   K+ + +P I
Sbjct: 216 TMVKLNWPKKRVTKMSSINPCI 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,301
Number of Sequences: 438
Number of extensions: 3344
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)