Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6233
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 31 0.10
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 27 1.7
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 1.7
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 27 2.2
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 2.9
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.9
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 26 3.9
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 3.9
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 5.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.1
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 6.8
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.8
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 6.8
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase... 25 6.8
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 25 6.8
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.0
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 31.5 bits (68), Expect = 0.10
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 472 KGPERSRMACPECGKGFKNAVRFNAHIRNL 561
+ P CPEC K FK + HIR+L
Sbjct: 416 RSPGGKSFVCPECSKKFKRSEHLRRHIRSL 445
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 496 PFWNVLDLSCVPTAYSFWLPNLLQVASDFQSSSC 395
PFW SC+ +A+ +P L+ DF S C
Sbjct: 253 PFWTSFVNSCLFSAFDATIPLELKTLFDFNSLQC 286
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -1
Query: 272 FKKSVRSCKLLLQCLHILFGNRVEFSTS-TPVICSNSSAK----VTGFSPSTITVSPR*T 108
F+ ++ +C+ + + L + G + E S P + S+AK + SPS SP+
Sbjct: 22 FQLALTACREIEESLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPKKA 81
Query: 107 WPSVVSPIQ 81
P+ V+P++
Sbjct: 82 TPAAVAPVE 90
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 295 RWSRTANYLANIGLEKNAATLYVVAANDFRTYRSKRKIENHSQLVKDLG 441
+W R+ LA+ G + N L+V D+R+ R K E H+ VK +G
Sbjct: 256 QWDRSLGQLASGGNDNN---LFVW---DYRSSRPLHKFEEHTAAVKAIG 298
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 109 VYLGDTVMVDGEKPVTLAELLEQITG 186
V+ GD + + P+ L++L+EQI+G
Sbjct: 145 VFQGDVETIASQSPLELSKLVEQISG 170
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 521 KPFPHSGQAILERSGPFMRADRVLILAPKSFTSCE*FSIFLL 396
KPF Q+IL S F+ L L K TSC F + +L
Sbjct: 279 KPFLTQFQSILNLSDKFLSKTGTLRLQEKLGTSCNLFFVLVL 320
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 520 FKNAVRFNAHIRNLKMKYCTQCGRLNE 600
FKN + +R++ M+ C G LNE
Sbjct: 128 FKNILEIIKEVRSMDMEVCVTLGMLNE 154
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Frame = +1
Query: 205 TLLPNKICKHCKSSLHDLTLFLKLCI-----DSFKRW 300
+L+P C C S+H L + LC+ D +K W
Sbjct: 1258 SLVPRMSCTFCCLSIHGLCIVCGLCLHVMHEDCYKEW 1294
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 18 SGRESINFPSS-QRGWRRKMSYLYG 89
SG ES + P ++GW +KMSY G
Sbjct: 208 SGEESFDEPLIYEQGWGKKMSYCLG 232
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Frame = +1
Query: 205 TLLPNKICKHCKSSLHDLTLFLKLCIDSFKRWSRTANYLANIGLEK----NAATLYVVAA 372
TL+ + +C + ++ FL+ D +W A + E+ + ++
Sbjct: 420 TLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEI 479
Query: 373 NDFRTYRSKRKIENHSQLVKDLGAKMSTRSAR 468
+ RS ++ + HS +V L A M R
Sbjct: 480 DGLAPIRSSKQEQTHSSIVSTLLALMDGLDTR 511
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 244 SLHDLTLFLKLCIDSFKRWSRTANYL 321
S+ D+ LF+K CIDS + W A+ L
Sbjct: 276 SVRDMNLFMKACIDS-QPWLDDASLL 300
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Frame = -3
Query: 480 WTFHACRPRTHF--GSQIFYKL 421
WTFH R HF S IFY L
Sbjct: 7 WTFHKLRKNEHFLKYSAIFYSL 28
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 6.8
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = +1
Query: 49 VRGDGAEKCRICMGETTEGQVYLGDTVMVDGEKPVTLAELLEQITGVEVENSTLLPN--- 219
+R G+E C+ C+ T Q D++ +AEL ++ E L P+
Sbjct: 46 IRCSGSEPCQACIA--TPSQCKYADSLKERTPSKQFIAELSQRQKCFEYLMELLCPSLPH 103
Query: 220 ------KICKHCKSSL 249
K+CKH +SSL
Sbjct: 104 DTRSLVKLCKHVESSL 119
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 473 KVQNVPEWLVPNAGRVLRTR 532
K +N+PEW++P A + R R
Sbjct: 23 KPENLPEWILPEAMKADRER 42
>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 307 TANYLANIGLEKNAATLYVVAANDFRTYRSKRKIEN 414
T+N L N+ NA + A N R + + +K+EN
Sbjct: 298 TSNLLPNVRENFNARKTFRTAYNAVRAFNTWKKLEN 333
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 127 VMVDGEKPVTLAELLEQITGVEVENSTLLPNKICKHCKSSLHDLTLFLKLCID 285
V+V P ++A L + + V + IC HC+ +H++ +C D
Sbjct: 104 VLVRSSIP-SVASLTCSVNSMSVSPQSNFMYAICDHCEQPIHNVRYKCSVCDD 155
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 9.0
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -2
Query: 460 TAYSFWLPNLLQ 425
T+YSFW+P ++Q
Sbjct: 500 TSYSFWIPQIIQ 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,765
Number of Sequences: 5004
Number of extensions: 55101
Number of successful extensions: 197
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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