Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6233
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.46 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.60 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.60 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.2  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   4.3  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   4.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   7.4  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +1

Query: 499 CPECGKGFKNAVRFNAHIR---NLKMKYCTQCGR 591
           CPEC K F        H+R     K  +C+ C R
Sbjct: 12  CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDR 45


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 230  LHILFGNRVEFSTSTPVICSNSSAKVTGFSPSTITVSPR*T 108
            L++   N++  S S+PV+   +  +  G  P+   +SP  T
Sbjct: 1473 LYLTSHNKIGSSPSSPVLSVRTQGQAPGIPPAATFLSPNST 1513


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 230  LHILFGNRVEFSTSTPVICSNSSAKVTGFSPSTITVSPR*T 108
            L++   N++  S S+PV+   +  +  G  P+   +SP  T
Sbjct: 1469 LYLTSHNKIGSSPSSPVLSVRTQGQAPGIPPAATFLSPNST 1509


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +1

Query: 499 CPECGKGFKNAVRFNAHIR---NLKMKYCTQCGR 591
           C  CGKGF  + +   H R     K   C  CG+
Sbjct: 206 CKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGK 239


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 492 SGTFWTFHACRPRTHFGSQIFYK 424
           +GT WTFH  R + +F    FYK
Sbjct: 176 NGTGWTFHEGRKQFYFHQ--FYK 196


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 221 LFGNRVEFSTSTPVICSNSSAKVTGFSPSTITVSP 117
           L G+    S  +PV   +S+   TGF  S IT+ P
Sbjct: 63  LEGSYDSSSGDSPVSSHSSNGIHTGFGGSIITIPP 97


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 527 FLKPFPHSGQAILERSGPFMRADRVLILAPKSFT 426
           F KPF + G  ILE+  P   +  V  L P S T
Sbjct: 535 FSKPFKYQGITILEKK-PSRSSTLVSFLQPFSNT 567


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 528 VLKTLPAFGTSHSGTFWTF 472
           VL+  P+F  S +G  WTF
Sbjct: 30  VLQPRPSFELSKNGDEWTF 48


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 528 VLKTLPAFGTSHSGTFWTF 472
           VL+  P+F  S +G  WTF
Sbjct: 32  VLQPRPSFELSKNGDEWTF 50


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
 Frame = +1

Query: 499 CPECGKGFKNAVRFNAHIR---NLKMKYCTQCGR 591
           C  CGK F        HIR     K   C  C R
Sbjct: 45  CHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNR 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,685
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)