Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6231
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   3.7  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   6.4  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 71  WXQWFRKWRIDINPTKSAAVLF 136
           W QW RK+ IDI  T    +++
Sbjct: 595 WAQWLRKFDIDIEATGPRVIVY 616


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 263 LGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSR 370
           LG++    M +  H   + D+   +LGR+ P+LCSR
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSR 209


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 KRGRP-PNITSSIPLRSRRANTSAVSP 214
           KR RP PNI +S P  +R  +T  V+P
Sbjct: 128 KRDRPLPNIRNSAPSATRSHSTPCVAP 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,741
Number of Sequences: 5004
Number of extensions: 61049
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)