Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6231
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    44   1e-04
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    40   0.001
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    36   0.023
Z81509-8|CAB04157.2|  310|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/97 (27%), Positives = 49/97 (50%)
 Frame = +2

Query: 221 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 400
           L G PI   +  + LG  +   + F  H K   + A F L  ++    + +K  +   + 
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192

Query: 401 LYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCR 511
           LYKT IRP + Y +VV +   +++ K+++ +Q+ F R
Sbjct: 193 LYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 26/97 (26%), Positives = 49/97 (50%)
 Frame = +2

Query: 221 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 400
           L G PI   +  + LG  +   + F  H +   + A F L  ++    + +K  +   + 
Sbjct: 166 LDGYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---IL 222

Query: 401 LYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCR 511
           LYKT IRP + Y +VV +   +++ K+++ +Q+ F R
Sbjct: 223 LYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 26/84 (30%), Positives = 42/84 (50%)
 Frame = +2

Query: 233 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 412
           PI   +  + LG+  D  +TF+PHIK +    +  L R   +L S   L       L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244

Query: 413 CIRPVMTYASVVFAHAARTNLKSL 484
            I P++ Y S V++    ++L +L
Sbjct: 245 YILPLIEYGSAVYSPKPSSSLSTL 268


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 31/101 (30%), Positives = 48/101 (47%)
 Frame = +2

Query: 152  PNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAA 331
            P  ++ + L +R  N S     ++ G PI   S V+ LG+  D  + F  HI  V   + 
Sbjct: 946  PTKSALLALGTRNKNQS----YSVDGVPITPSSTVRDLGLITDCKLKFEHHIVKV---SC 998

Query: 332  FILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFA 454
              + R   +L + S  S +    LYKT + P+M Y S V+A
Sbjct: 999  LAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039


>Z81509-8|CAB04157.2|  310|Caenorhabditis elegans Hypothetical
           protein F21A3.3 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 717 ALGDVDGLPFGLLGRVCNFPAATMRGFSCRAAFSKWRSDADCRY 586
           +LG+    PFGL+GR C  P   +   SC    ++W+S+  C +
Sbjct: 48  SLGNRCECPFGLMGRRCQRPCQDVYK-SC----ARWKSEERCHW 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,434
Number of Sequences: 27780
Number of extensions: 365750
Number of successful extensions: 874
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)