Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6227
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615     29   2.9  
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    28   3.8  
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916...    28   5.1  
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449...    27   6.7  
10_01_0336 + 3707065-3707174,3707183-3708185                           27   8.8  
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881     27   8.8  
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649...    27   8.8  

>05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615
          Length = 458

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +2

Query: 209 PWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSP 385
           P F   +   DDL   S+S+ +Q      FD       P  VA+  + PD  +   SSP
Sbjct: 377 PGFQEGIYFLDDLQFYSVSRIVQYQEYLCFDNGKYTLGPPHVASRCFWPDQVNSNYSSP 435


>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +2

Query: 176 QSRFCRIAV-GAPWFVRNVDLHDDLDLESISKYLQSASMRHFD--KAARHENPLI--VAA 340
           +++F ++AV GAP ++R VDL      + +   LQ     HF   K    E  L+  V+ 
Sbjct: 118 KAKFVKVAVDGAP-YLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSG 176

Query: 341 GNYIPDPADR 370
             Y+P   D+
Sbjct: 177 NEYVPTYEDK 186


>10_05_0101 -
           9167383-9167679,9167883-9167961,9168161-9168326,
           9169201-9169299,9169969-9171361
          Length = 677

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 82  TLQNLHTPRHDLCKCSVRSR 141
           T+QNL+ PR DLC+ S  S+
Sbjct: 5   TIQNLYAPRADLCEPSCSSK 24


>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
            23745083-23745190,23745378-23745587,23745881-23746055,
            23746197-23746264
          Length = 1186

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 329  IVAAGNYIPDPADRMESSPRRPKHVISDPPDPLT 430
            +VA  + + D  +R  ++PRRP+    DP  PLT
Sbjct: 1153 VVARLDRLIDIGERKMANPRRPRRHGKDPVPPLT 1186


>10_01_0336 + 3707065-3707174,3707183-3708185
          Length = 370

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 424 WIRRIRDDVFRATWTAFHSVRRIGNVVTGGHDERVLVSCRFIEVA 290
           W   + D  F   +  FH +  +   V  G D R LV  RF+  A
Sbjct: 39  WRSLLTDPAFLRRYREFHGLPHLIGYVHDGADGRDLVVARFVTTA 83


>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
          Length = 697

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 338 AGNYIPDPADRMESSPRRPKHVISD 412
           AG   P P+ ++E+SP RP+  ++D
Sbjct: 67  AGPITPSPSWKLEASPPRPEEPVAD 91


>06_03_0049 +
           15961706-15962017,15962952-15963851,15964769-15964913,
           15964969-15965705
          Length = 697

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 320 SRVVPLYRSGAWTPTADTY*WTLSP 246
           S +V +Y +G W PT D   WT +P
Sbjct: 569 STLVQMYEAG-WAPTGDATGWTQAP 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,950,897
Number of Sequences: 37544
Number of extensions: 304066
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)