Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6225
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.3  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 163 IHNNNSTKNKSLRNQN 116
           IHNNN+  N +  N N
Sbjct: 90  IHNNNNYNNNNYNNYN 105


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 351 NFNQNIQQFIATIFPSLIMY 292
           N+N+NI++F  +  P   MY
Sbjct: 546 NYNENIERFFKSKPPVATMY 565


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 327 FIATIFPSLIMYVCLFR 277
           F++ + P+LI+Y   FR
Sbjct: 15  FLSLLIPALILYFIYFR 31


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 235 TALEISCIYRWHCF 194
           TA+     YRWH F
Sbjct: 394 TAMRDPIFYRWHAF 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,535
Number of Sequences: 438
Number of extensions: 2690
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)