Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6224
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 248 3e-66
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 248 3e-66
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 94 9e-20
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 1.2
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 1.2
U58751-10|AAB00661.1| 205|Caenorhabditis elegans Hypothetical p... 28 6.5
Z75955-12|CAB00115.2| 485|Caenorhabditis elegans Hypothetical p... 27 8.6
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 27 8.6
AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein. 27 8.6
AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein. 27 8.6
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 27 8.6
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 248 bits (607), Expect = 3e-66
Identities = 111/186 (59%), Positives = 141/186 (75%), Gaps = 1/186 (0%)
Frame = +1
Query: 88 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 267
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 268 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 444
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 445 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 624
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 625 LEADWD 642
LE DWD
Sbjct: 191 LEEDWD 196
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 248 bits (607), Expect = 3e-66
Identities = 111/186 (59%), Positives = 141/186 (75%), Gaps = 1/186 (0%)
Frame = +1
Query: 88 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 267
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 268 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 444
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 445 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 624
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 625 LEADWD 642
LE DWD
Sbjct: 191 LEEDWD 196
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 93.9 bits (223), Expect = 9e-20
Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 13/152 (8%)
Frame = +1
Query: 220 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 390
E D GL AR +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ +
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166
Query: 391 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 540
+ + +T Y IMFGPD CG T KVH+IF YK + + DD
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225
Query: 541 YTHLYTLIVKPDNTYEVLIDNEKVESGDLEAD 636
THL+TL+VKP Y V +D + + G++ +D
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSD 257
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 496 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 618
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 496 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 618
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>U58751-10|AAB00661.1| 205|Caenorhabditis elegans Hypothetical
protein C07G1.7 protein.
Length = 205
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 375 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPR 253
D E + +L D ++DY+ F + E+F G+S+ R
Sbjct: 130 DRETCEENIKILQREDRDVDYREFLTMAEKFNEEGQSLWAR 170
>Z75955-12|CAB00115.2| 485|Caenorhabditis elegans Hypothetical
protein R07B7.6 protein.
Length = 485
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -3
Query: 612 NFLIVNEDFIGVVRFHNQSVQMCVDIIFAADIF-FDEMVLTLVTEDYVYLLGSRTTNVRA 436
N +IV++ F+ + F ++ + + + D + DEM++ + E+Y+ L G +N
Sbjct: 318 NEVIVSKVFVKSM-FEKLNMDIIIKLFDDNDYYGVDEMLVQTLYENYLGLEGQMESNCTR 376
Query: 435 EHNLIWSLSVH 403
HN I + H
Sbjct: 377 NHNDILTRMTH 387
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 543 VDIIFAADIFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIW 418
+D+I A+D+FFD + + + LL ++ EH IW
Sbjct: 111 LDVIIASDVFFDPSTFCPLIDTFAQLL------IKFEHATIW 146
>AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein.
Length = 394
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -1
Query: 326 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 150
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 245 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 302
Query: 149 TQLLSHESSGNFSSKNTSQFIE 84
T + S +SS N +++ S+ ++
Sbjct: 303 THVTSQQSSVNIAAERFSRILQ 324
>AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein.
Length = 459
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -1
Query: 326 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 150
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 342 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 399
Query: 149 TQLLSHESSGNFSSKNTSQFIE 84
T + S +SS N +++ S+ ++
Sbjct: 400 THVTSQQSSVNIAAERFSRILQ 421
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -1
Query: 326 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 150
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 466 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 523
Query: 149 TQLLSHESSGNFSSKNTSQFIE 84
T + S +SS N +++ S+ ++
Sbjct: 524 THVTSQQSSVNIAAERFSRILQ 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,147
Number of Sequences: 27780
Number of extensions: 368587
Number of successful extensions: 1163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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