Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6223
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1245 + 28652216-28652524,28652564-28652761,28652880-286529...    28   5.0  
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016...    28   6.7  

>06_03_1245 +
           28652216-28652524,28652564-28652761,28652880-28652981,
           28653663-28653822,28654057-28654439
          Length = 383

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 278 LQPHGFRSLRNDARGPDLHKQCRHRVTRAATILLIEESHCYR 403
           L+P GF ++ N     D   QCR++V+ A  + L      Y+
Sbjct: 128 LKPEGFTTVLNAKAAVDSDPQCRYKVSCADILALAARESVYQ 169


>10_08_0493 +
           18299885-18299892,18300201-18300837,18301254-18301676,
           18301769-18302014,18302124-18302789,18303228-18303283,
           18303367-18303460,18303559-18303738
          Length = 769

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 189 REVSTTTTPIPFPPCRADDIDCL-RRGLRTFFNLMDSGHYGMTPVDPIY 332
           R+ S++  P PF P     +D L  R    +    +S  YG  P DP Y
Sbjct: 463 RDGSSSNNPTPFAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPY 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,392
Number of Sequences: 37544
Number of extensions: 378140
Number of successful extensions: 847
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)