Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6223
         (608 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2887|AAN09510.1|  335|Drosophila melanogaster CG14208-P...    29   6.6  
AE014298-2886|AAN09509.1|  441|Drosophila melanogaster CG14208-P...    29   6.6  

>AE014298-2887|AAN09510.1|  335|Drosophila melanogaster CG14208-PA,
           isoform A protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 216 IPFPPCRADDIDCLRRGLRTFFNLM-DSGHYGM-TPVDPIYINSVAIALPEQQLSFLLRK 389
           +P P     ++  LR  +  F  ++  SG  G+   + P  ++    ALP   + FL  +
Sbjct: 108 VPKPGRDPQNLRPLRGAMDAFVKIVCTSGFSGLWAGLSPTLVS----ALPSTIIYFLTYE 163

Query: 390 VIVTGISWTKLVDKRFHENGIKNGV 464
            I   +S   LV ++F E+G+K+ V
Sbjct: 164 YIKNSLSHIYLVSQKFEESGMKDQV 188


>AE014298-2886|AAN09509.1|  441|Drosophila melanogaster CG14208-PB,
           isoform B protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 216 IPFPPCRADDIDCLRRGLRTFFNLM-DSGHYGM-TPVDPIYINSVAIALPEQQLSFLLRK 389
           +P P     ++  LR  +  F  ++  SG  G+   + P  ++    ALP   + FL  +
Sbjct: 108 VPKPGRDPQNLRPLRGAMDAFVKIVCTSGFSGLWAGLSPTLVS----ALPSTIIYFLTYE 163

Query: 390 VIVTGISWTKLVDKRFHENGIKNGV 464
            I   +S   LV ++F E+G+K+ V
Sbjct: 164 YIKNSLSHIYLVSQKFEESGMKDQV 188


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,560,291
Number of Sequences: 53049
Number of extensions: 639165
Number of successful extensions: 1383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)