Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6219
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0253 + 13492707-13493183,13493293-13493636,13494136-134942...    29   2.8  
02_02_0558 + 11477433-11477525,11477632-11477973,11481854-114823...    29   2.8  

>06_02_0253 +
           13492707-13493183,13493293-13493636,13494136-13494265,
           13494736-13494856,13494902-13495026
          Length = 398

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 138 GHVMRREKMHVTRRCMEMVVQGSAR 64
           GH +RR+ +H+T RCM+ +V+  AR
Sbjct: 24  GHQVRRQ-VHLTMRCMQALVRAQAR 47


>02_02_0558 +
           11477433-11477525,11477632-11477973,11481854-11482381,
           11482459-11482956
          Length = 486

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 138 GHVMRREKMHVTRRCMEMVVQGSAR 64
           GH +RR+ +H+T RCM+ +V+  AR
Sbjct: 165 GHQVRRQ-VHLTMRCMQALVRAQAR 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,222,616
Number of Sequences: 37544
Number of extensions: 354512
Number of successful extensions: 668
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)