Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6219
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    31   1.1  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    30   1.4  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
           protein C48B4.4c protein.
          Length = 1704

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 431 RFFVFFLCSSRIKLYFILNVISTYLLNVNILVAGRTACSF 312
           +FFV FLCS  I L F++  +S   L V +L+ G  A  F
Sbjct: 312 KFFVIFLCSI-IPLTFVMEFVSPAALIVTVLMYGLGAVIF 350


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
           protein C48B4.4b protein.
          Length = 1691

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 431 RFFVFFLCSSRIKLYFILNVISTYLLNVNILVAGRTACSF 312
           +FFV FLCS  I L F++  +S   L V +L+ G  A  F
Sbjct: 312 KFFVIFLCSI-IPLTFVMEFVSPAALIVTVLMYGLGAVIF 350


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
           protein C48B4.4a protein.
          Length = 1689

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 431 RFFVFFLCSSRIKLYFILNVISTYLLNVNILVAGRTACSF 312
           +FFV FLCS  I L F++  +S   L V +L+ G  A  F
Sbjct: 312 KFFVIFLCSI-IPLTFVMEFVSPAALIVTVLMYGLGAVIF 350


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
           cassette transporter protein.
          Length = 1704

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 431 RFFVFFLCSSRIKLYFILNVISTYLLNVNILVAGRTACSF 312
           +FFV FLCS  I L F++  +S   L V +L+ G  A  F
Sbjct: 312 KFFVIFLCSI-IPLTFVMEFVSPAALIVTVLMYGLGAVIF 350


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 153 RLAWYGHVMRREKMHVTRRCMEMVVQGSARG*GRPKKTWMECVNDYMRERE 1
           +L W GHV RR+    T    E    G  R  GRP   W + +   +  R+
Sbjct: 811 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRD 861


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 153  RLAWYGHVMRREKMHVTRRCMEMVVQGSARG*GRPKKTWMECVNDYMRERE 1
            +L W GHV RR+    T    E    G  R  GRP   W + +   +  R+
Sbjct: 986  KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRD 1036


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 153 RLAWYGHVMRREKMHVTRRCMEMVVQGSARG*GRPKKTWMECVNDYMRERE 1
           +L W GHV RR+    T    E    G  R  GRP   W + +   +  R+
Sbjct: 725 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRD 775


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 153 RLAWYGHVMRREKMHVTRRCMEMVVQGSARG*GRPKKTWMECVNDYMRERE 1
           +L W GHV RR+    T    E    G  R  GRP   W + +   +  R+
Sbjct: 337 KLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRD 387


>Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical
           protein C11E4.3 protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 506 PGM*KGNY--RARFVRNNLICNLEICDRFFVFFLCSSRIKLYFILNVISTYLLNVNIL 339
           P +   NY  + ++V N+   N E+C RF+V+        L+F+ +  S +  N N L
Sbjct: 351 PDVIADNYLDKIQYVWNSAEVNEEVCFRFYVYVCVCVCAVLHFLPHSFSFFSFNRNFL 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,638
Number of Sequences: 27780
Number of extensions: 341172
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)