Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6217
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   4.1  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   4.1  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   4.1  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   4.1  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   4.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.4  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 246 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 148
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 246 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 148
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 246 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 148
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 246 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 148
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 246 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 148
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 453 IDPRSYSIIPCTKYSSSIFSPL 388
           I  R++ ++    YS+S F+P+
Sbjct: 302 ISGRAFQVLTWLGYSNSAFNPI 323


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 204 NYELFNRNNFSIRYWSWNY 148
           NY   N NN+   Y++ NY
Sbjct: 95  NYNNNNYNNYKKLYYNINY 113


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 204 NYELFNRNNFSIRYWSWNY 148
           NY   N NN+   Y++ NY
Sbjct: 105 NYNNNNYNNYKKLYYNINY 123


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 70  PRNRNEYTLNILTRNNW 120
           PRN +EY  N L    W
Sbjct: 368 PRNIDEYNNNDLDTKKW 384


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -3

Query: 264 SANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNYRG 142
           + +VS  P      S      Y  F+  +  +++ SW Y G
Sbjct: 143 TGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNG 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,259
Number of Sequences: 438
Number of extensions: 3229
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)