Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6216
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0113 + 4408171-4409415,4409902-4409907                           28   4.1  
07_03_1203 - 24848342-24848885,24849199-24849204,24849648-248499...    27   7.2  

>09_02_0113 + 4408171-4409415,4409902-4409907
          Length = 416

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +3

Query: 54  NASEPRL*AAARSPVHIQITLQRRVLLTYLCILKKVIKYDIY 179
           +AS  RL  AA SPV    +   R+ L YL   K  I YD+Y
Sbjct: 87  SASRGRLHPAAVSPVDASSSSSPRLSLDYLGGTKGFIIYDVY 128


>07_03_1203 -
           24848342-24848885,24849199-24849204,24849648-24849947,
           24852725-24853047,24853076-24853255
          Length = 450

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -2

Query: 253 ECKRTLDNFYVPNEYNKWQTVSSTS*ISYLITFFNIHKYVNKTRRCNVI*ICTGER 86
           EC   L+  Y+  E  K     +   +S   ++ N+   + +  RC +I IC G +
Sbjct: 116 ECVPFLEGIYLDEEEAKLDAAPTPRLMSTHASYPNLPASITEDDRCKIIYICRGTK 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,515,728
Number of Sequences: 37544
Number of extensions: 207678
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)