Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6216
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.6  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    22   4.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.1  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -3

Query: 222 YPMNTTNGKR 193
           YP+NTTNG++
Sbjct: 363 YPLNTTNGRK 372


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 347 LTVLAGDVRSGSCYNV*SCNG 409
           L  + GD  SG  Y V SC G
Sbjct: 109 LCSICGDRASGKHYGVYSCEG 129


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 347 LTVLAGDVRSGSCYNV*SCNG 409
           L  + GD  SG  Y V SC G
Sbjct: 109 LCSICGDRASGKHYGVYSCEG 129


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 344 ILTVLAGDVRSGSCYNV*SCNG 409
           +L  + GD  SG  Y V SC G
Sbjct: 7   VLCRVCGDKASGFHYGVHSCEG 28


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 344 ILTVLAGDVRSGSCYNV*SCNG 409
           +L  + GD  SG  Y V SC G
Sbjct: 65  VLCRVCGDKASGFHYGVHSCEG 86


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 347 LTVLAGDVRSGSCYNV*SCNG 409
           L ++ GD  SG  YN  +C G
Sbjct: 186 LCLVCGDRASGYHYNALTCEG 206


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 428 DKSKNNIHC 402
           +KSKNN HC
Sbjct: 60  EKSKNNHHC 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,015
Number of Sequences: 438
Number of extensions: 2841
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)