Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6214
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical p...    28   7.2  

>U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical
           protein AH9.4 protein.
          Length = 364

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -3

Query: 329 DVFIQSQFIRIFLL--FAQFNLPECW*LTLDYIVIVYNIHLFTE*TFKLLS*TRRYAFHV 156
           DVF +S F  + LL  F  + +P    +TLD++V+++    F+      ++  RRYA   
Sbjct: 163 DVFHESAFKHVHLLDIFLFYAIPSLLRITLDFLVLIHCYSPFSVEGLDRVTIDRRYAISG 222

Query: 155 QTTPFR 138
             T  R
Sbjct: 223 PATTKR 228


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 503 FWRVLELFI---ISNYIFNFVVNSEIACGNINLSVSTFHVYKCFLR 631
           F  +L +F+   +SN  F    +    C N+ L +ST  +Y+ F+R
Sbjct: 225 FSNILPVFVSSQLSNIDFLITSSMTTVCRNLGLMISTVIIYRIFMR 270


>U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical
           protein F30B5.6 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 503 FWRVLELFI---ISNYIFNFVVNSEIACGNINLSVSTFHVYKCFLR 631
           F  +L +F+   +SN  F    +    C N+ L +ST  +Y+ F+R
Sbjct: 225 FSNILPVFVSSQLSNIDFLITSSMTTVCRNLGLLISTVLIYRIFMR 270


>U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical
           protein C17G10.7 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -3

Query: 476 LFLFFKSNFIRFL*SHYPFVFNYHSLFLSETILLQSLQNS 357
           L +FF + F+ FL S Y  ++N+  +FLS  +LL+ + +S
Sbjct: 53  LLMFFVNTFVVFL-SMYG-LYNFRPVFLSPNVLLKIILSS 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,014,496
Number of Sequences: 27780
Number of extensions: 250706
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)