Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6213
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    29   0.63 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   1.5  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   5.9  

>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 230 EETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKR 337
           E TDP+  + ++K  +  + E+E  YK KK +  K+
Sbjct: 362 EITDPEFAEKLIKAADAQIDEVEKQYKKKKIKKSKK 397


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 214 YFMKPFSKQVETLRPISTQIEERF-IKIQNRFS 119
           YF K FS+ V+ L+P+ +++   + I++ N FS
Sbjct: 117 YFQKDFSQTVDDLKPLLSELGLNYEIELPNSFS 149


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = -1

Query: 220 AKYFMKPFSKQVETLRPISTQIEERFIKIQNRFSMWLGHDVYFALLKCYSKIRVHSPYTN 41
           AKY+ + F+     +  +   +   ++K++NRF+  L +D+Y   L  +    V S   +
Sbjct: 115 AKYWTR-FTTSARFINHLFGYLNRYWVKLKNRFTETLVYDIYTLCLVSWHH-HVFSHIRD 172

Query: 40  PICQN 26
            + QN
Sbjct: 173 SLLQN 177


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = -1

Query: 298 FNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPISTQIEERFIKIQNRFS 119
           FN+ N+K  +   Y   L      +L ++  + F++ +E +  +S+ +      +Q RF+
Sbjct: 124 FNYANSKDPLHIWYKARLDFLHQQMLKEHVSELFNQIMEGMHIVSSHVSSLDRDLQGRFT 183

Query: 118 MWLG 107
           M +G
Sbjct: 184 MEMG 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,518
Number of Sequences: 5004
Number of extensions: 38289
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)