Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6213
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    32   0.28 
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465...    28   4.5  
03_01_0249 - 1935355-1935827,1936129-1936330                           27   7.9  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 188 LFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKRR 340
           L  ++LH + S  S   DPQ    +    EF+ +++EA+ K+ +Y A  RR
Sbjct: 188 LVNEKLHNLHSVASRCNDPQLTDFV--ESEFLEEQVEAIKKISEYVAQLRR 236


>02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,
            4658808-4658873,4658954-4659076,4659562-4659629,
            4659703-4659766,4659994-4660135,4660218-4660306,
            4660574-4660637,4660870-4661021,4661124-4661261,
            4661742-4661867,4661971-4662183,4662343-4662426,
            4662583-4662742,4662993-4663126,4664047-4664136,
            4664313-4664471,4665528-4665611,4666170-4666289,
            4666338-4666391,4666899-4666945,4667556-4667598,
            4667730-4668586,4668845-4668899
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
 Frame = +2

Query: 20   FLILTNWIRVWTMNSYL*ITF*KSKIYIMAQPHRKAVLNLYKTLLYLGRDWPQGFDLFRK 199
            FL+L   + V   N +L     K K Y+  + + K V      L+Y        F +  K
Sbjct: 835  FLVLWEMVVVHPDNDFLEDITGKLKEYVKEEMNVKMVTACSDPLVYSSLRAEPNFSVLGK 894

Query: 200  RLHKVFSKNSEET---DPQKIQIMVKHGE-FVVKEIEALYKLKKYRAMKR 337
            RL K   K S E       +I    + GE F    +  L  +K +R  KR
Sbjct: 895  RLGKDMGKISNEVKKMTQDQILTFEESGEIFFGSHLLTLEDIKVFREFKR 944


>03_01_0249 - 1935355-1935827,1936129-1936330
          Length = 224

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 160 QIEERFIKIQNRFSMWLGHDVYFALLKCYSKIRVHSPYTN 41
           Q E + +K+ + +  WLG + YFA  +      VH P T+
Sbjct: 141 QNEAKLVKVLDVYEQWLGENQYFAGDEFSLADLVHMPNTD 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,105
Number of Sequences: 37544
Number of extensions: 199249
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)