Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6213
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032618-5|CAE17991.1|   83|Caenorhabditis elegans Hypothetical ...    80   1e-15
U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    32   0.25 
U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical pr...    32   0.33 
AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical ...    30   1.0  
AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical ...    30   1.0  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    27   9.4  
AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AL032618-5|CAE17991.1|   83|Caenorhabditis elegans Hypothetical
           protein Y42A5A.5 protein.
          Length = 83

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/64 (54%), Positives = 47/64 (73%)
 Frame = +2

Query: 158 LGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKR 337
           +G+++P G   F  RL   FSKN E  D ++++ ++  GEFVVKEIEALY L+KYRAMK+
Sbjct: 1   MGKEYPGGSKWFHDRLKLAFSKNKEVQDSKQVEQLIARGEFVVKEIEALYSLRKYRAMKQ 60

Query: 338 RYYD 349
           RYYD
Sbjct: 61  RYYD 64


>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +2

Query: 95  IYIMAQPHRKAVLNLYKTLLYLGRDWPQGFDL---FRKRLHKV-FSKNSEETDPQKIQIM 262
           ++  A  HR+ V  LYK  L    +W  G +L   F+K + +  F  N++E D +K QI+
Sbjct: 7   MFTKALSHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQIL 66

Query: 263 VKHG 274
           +  G
Sbjct: 67  LADG 70


>U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical
           protein B0244.5 protein.
          Length = 300

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 343 ISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPI- 167
           ISSL  S ++ ++      +   T+++ +     +SF+++L  Y        + T+RPI 
Sbjct: 90  ISSLSASSIMMVLRLLKMLSTSFTVYFLFFLIDDLSFYSLLGSYVGSTLLLYLATVRPIF 149

Query: 166 -STQIEERFI 140
            S QI  R +
Sbjct: 150 YSIQISVRIV 159


>AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical
           protein F22F7.1b protein.
          Length = 392

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 274 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 185
           + FY YL  LWI F +I  KY   PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302


>AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical
           protein F22F7.1a protein.
          Length = 426

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 274 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 185
           + FY YL  LWI F +I  KY   PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +2

Query: 122 KAVLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEET----DPQKIQIMVKHGEFVVK 289
           + V  L KT +  G ++ +      K+ HK    +S       DPQK+ + +  G FV+K
Sbjct: 583 ECVSRLRKTAID-GENFVKDIQKTYKKSHKTLESDSSPVLKLEDPQKVVLTLGRGMFVLK 641

Query: 290 EI-EAL-YKLK 316
           E+ EAL Y+L+
Sbjct: 642 EMTEALTYRLR 652


>U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical
           protein B0244.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = -1

Query: 343 ISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPI 167
           IS+L   V++  +       +  T+++ +     +SF+++L  Y        + T+RPI
Sbjct: 90  ISALTACVIMLALRILQLITSSFTIYFLFFLIDDLSFYSLLGSYVGSAILLYLATIRPI 148


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 128 VLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKH 271
           + N++K L+    +  + FD F +   +   KN+  T+  K  I+ +H
Sbjct: 390 IRNIHKLLITFSGEEQEDFDFFYENFKETVLKNNNFTNHAKYLILKQH 437


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 128 VLNLYKTLLYLGRDWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKH 271
           + N++K L+    +  + FD F +   +   KN+  T+  K  I+ +H
Sbjct: 390 IRNIHKLLITFSGEEQEDFDFFYENFKETVLKNNNFTNHAKYLILKQH 437


>AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical
           protein D2063.2 protein.
          Length = 643

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 328 CSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRPISTQI 155
           C    +LI     F NK+T  Y Y+     S+FT L  Y +   +  +E +RPI + I
Sbjct: 585 CGRKCELIDYLPLFFNKITNMYQYVDSRGFSYFTTL--YHLS--AHGIELVRPIYSAI 638


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,161,294
Number of Sequences: 27780
Number of extensions: 206060
Number of successful extensions: 554
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)