Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6213
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -1

Query: 256 LYFLWISFFTILAKYFMKPFSKQVETLRPISTQIEERFIKIQNRFSMW---LGHDVYFAL 86
           ++FL++  +T  A   +       E L P+ST +   F K  +    W   + H  Y   
Sbjct: 287 IFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSCIDPWIYAINHPRYRQE 346

Query: 85  LKCYSK-IRVHSPYT 44
           L+   K + +H P T
Sbjct: 347 LQKRCKWMGIHEPET 361


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -1

Query: 256 LYFLWISFFTILAKYFMKPFSKQVETLRPISTQIEERFIKIQNRFSMW---LGHDVYFAL 86
           ++FL++  +T  A   +       E L P+ST +   F K  +    W   + H  Y   
Sbjct: 287 IFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSCIDPWIYAINHPRYRQE 346

Query: 85  LKCYSK-IRVHSPYT 44
           L+   K + +H P T
Sbjct: 347 LQKRCKWMGIHEPET 361


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 187 VETLRPISTQIEERFIKIQNRFSMWLGHD 101
           +E L  ++  +EE+  ++ NR S+   HD
Sbjct: 95  IEQLTKLNNAVEEKRPELTNRKSVVFHHD 123


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 19 VFNFDKLDSCMD 54
          +FN DKLD+ MD
Sbjct: 34 IFNEDKLDNLMD 45


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 187 VETLRPISTQIEERFIKIQNRFSMWLGHD 101
           +E L  ++  IEE+  ++ NR  +   HD
Sbjct: 96  IEHLTKLNNAIEEKRFELTNRKGVVFHHD 124


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 100 VYFALLKCYSKIRVHSP 50
           +Y  +L C+ K R H P
Sbjct: 867 IYQLMLDCWQKERTHRP 883


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 67  SLNNILKEQNIHHGPAT 117
           S N+ + +  I+HGP T
Sbjct: 888 SFNHFVLKMGINHGPVT 904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,277
Number of Sequences: 438
Number of extensions: 2651
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)