Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6212
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    28   0.55 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   0.96 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    24   6.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   9.0  

>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 27.9 bits (59), Expect = 0.55
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 57  YLLISRICTVMRNNSPP 7
           Y ++S+IC+V+R+ SPP
Sbjct: 416 YFVLSQICSVLRSQSPP 432


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 75  GQNSFVYLLISRICTVMRNNSPPLD 1
           G NSF YLL+S   T+ + N P  D
Sbjct: 279 GPNSFEYLLVSAFLTLTQLNLPAYD 303


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 120 LHDLLKRVKKGLISIVELQ 176
           L   L+R K GLIS+ ELQ
Sbjct: 44  LFSKLRRAKNGLISMTELQ 62


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 158 INCRITKLNIIIVNNRLSRS 217
           INC I K++ + +N++ SRS
Sbjct: 640 INCSIDKIHSLYLNDKKSRS 659


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 221  STHSCEFR*MWRTRMGLEPTEDCRV 295
            S H+ EF+ +W  R   E  E C V
Sbjct: 1295 SLHNAEFQGLWPLRTQAEKNEVCAV 1319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,394
Number of Sequences: 5004
Number of extensions: 25817
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)