Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6212
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0317 + 28425408-28426079,28426286-28426351                       28   2.1  
10_08_0791 - 20590744-20591211,20591379-20591439,20591525-205915...    28   2.7  
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234...    27   4.8  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    27   6.3  
09_06_0053 - 20537433-20537833,20537910-20538456                       26   8.4  
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965...    26   8.4  

>01_06_0317 + 28425408-28426079,28426286-28426351
          Length = 245

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 375 TTHYRANWVPGPPSRNNNYRFQRIPATTLQSSVGSRPIR 259
           T H+   WVP P  R  ++R   +PA +     G+RP R
Sbjct: 13  TAHHLKPWVPTPTPR--SHRVPSLPAVSGGGGGGARPAR 49


>10_08_0791 -
           20590744-20591211,20591379-20591439,20591525-20591592,
           20592015-20592188,20592291-20592331,20592571-20592620,
           20593083-20593171,20593250-20593324,20593631-20593719,
           20593895-20593955,20594111-20594227,20594465-20594667,
           20594785-20594842,20594951-20595103
          Length = 568

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 348 PGPPSRNNNYRFQRIPATTLQ 286
           P PP R++++ F R+PA  LQ
Sbjct: 546 PTPPERHDSFSFPRLPAHNLQ 566


>10_08_0004 +
           14022511-14022670,14022740-14023049,14023193-14023414,
           14023497-14023721,14024045-14024119,14024619-14024754,
           14025124-14025251,14025337-14025419,14025505-14025626,
           14025732-14025810,14026252-14026420,14026562-14026622,
           14026729-14026851,14027675-14027914,14028045-14028113,
           14028353-14028429,14028527-14028593
          Length = 781

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 353 GYRAPPRGIIIIGFKEYRRRPCSLQLVLDPF 261
           GY+  PR +   G K    RPC+L  V DPF
Sbjct: 269 GYQKTPRKL---GIKYCFNRPCALYAVPDPF 296


>07_03_1575 -
           27848977-27849095,27849254-27849302,27850270-27850287,
           27850798-27851786,27852119-27852733,27852893-27852921,
           27853990-27854453,27854530-27854654,27854743-27855025,
           27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 296 RPCSLQLVLDPFAFSTFT*THNCVYYVNDLV 204
           R  S QL L PF   TF     C+ YVN L+
Sbjct: 262 RSFSRQLFLSPFLLETFVAALRCI-YVNPLI 291


>09_06_0053 - 20537433-20537833,20537910-20538456
          Length = 315

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 372 THYRANWVPGPPSRNNNYRFQRIPATTLQSSVGSRPIR 259
           TH ++ WVP    R    +   + A+   ++ G+ P R
Sbjct: 126 THVKSTWVPAAKRRERQQQLAALAASAAATAGGAGPSR 163


>04_04_0677 +
           27195264-27195291,27196034-27196271,27196350-27196500,
           27196578-27196972,27197270-27197339,27197414-27197696,
           27197972-27198297,27198409-27199368
          Length = 816

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 363 RANWVPGPPSRNNNYRFQRIPATTLQSSVGSRPI 262
           RA  VP PPSR         P+ T+ S VGSR +
Sbjct: 698 RAVGVPCPPSRARWCSDLNAPSVTVASLVGSRRV 731


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,889,243
Number of Sequences: 37544
Number of extensions: 166494
Number of successful extensions: 296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)