Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6207
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1014 - 33810112-33811995                                         28   2.1  
11_01_0285 - 2115051-2115146,2115220-2115306,2115417-2115503,211...    27   4.9  
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100...    27   6.5  
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824...    26   8.6  

>01_06_1014 - 33810112-33811995
          Length = 627

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 17  IYFIHGGFIDLF-VTLNEFLHWHDLYEHNLQIYSKMFYNFFQVDTAIYF 160
           + F    F+DL  + + +   WH+LY H++++ S  F    Q+   I +
Sbjct: 313 LQFDKSWFLDLRKIAVLQLGRWHNLYRHHIEVDSTEFLEGLQLSKQIKY 361


>11_01_0285 -
           2115051-2115146,2115220-2115306,2115417-2115503,
           2115724-2115809,2115889-2115992,2117447-2117533,
           2117621-2117744,2118420-2118538,2118626-2118755,
           2118902-2118990,2119122-2119210,2119985-2120078,
           2120187-2120266,2120363-2120452,2121195-2121281,
           2121381-2121425,2121847-2121923,2121997-2122102,
           2122258-2122339,2122430-2122501,2122502-2122585,
           2123007-2123084,2123155-2123224,2123737-2123851
          Length = 725

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 102 CKFIAKCFIISSKLTPRFISIM 167
           CKFIA+CFI    L    ++++
Sbjct: 598 CKFIAQCFIYGDSLNSSLVAVV 619


>03_06_0108 +
           31708713-31709079,31709258-31709822,31709933-31710015,
           31710231-31710319,31710486-31710559,31710654-31710704,
           31710807-31710883,31711454-31712031,31712388-31712555,
           31713364-31713417,31713456-31713467,31713554-31713715
          Length = 759

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 74  HWHDLYEHNLQIYSKMFYNFFQVDTAIYFYYGSNSNPVL 190
           H H +++H  Q    +FYN      A  FYYG   + V+
Sbjct: 47  HHHHVHQHQQQHGGGLFYN--PAAVASSFYYGGGHDAVV 83


>06_03_1025 -
           26980631-26981286,26981434-26981557,26982290-26982426,
           26983220-26983355,26983615-26983922,26985159-26985207
          Length = 469

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 161 YYGSNSNPVLFRKPQYCCELSYKFIKY 241
           Y G  S+P L     YCCE S++ + Y
Sbjct: 124 YLGQLSHPNLVELIGYCCEGSHRLLVY 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,956,378
Number of Sequences: 37544
Number of extensions: 155808
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)