Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6207
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64599-6|AAL11464.1|  284|Caenorhabditis elegans Unidentified vi...    28   1.9  
U64599-5|AAM69110.1|  303|Caenorhabditis elegans Unidentified vi...    28   1.9  
U64599-4|AAB04562.1|  429|Caenorhabditis elegans Unidentified vi...    28   1.9  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    27   5.9  
Z81479-6|CAB03938.1|  411|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical ...    27   5.9  
AC024090-7|AAF35429.2|  294|Caenorhabditis elegans Hypothetical ...    26   7.8  

>U64599-6|AAL11464.1|  284|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform b
           protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 59  LNEFL-HWHDL-YEHNLQIYSKMFYNFFQVDTAIYFYYGSNSNPVLF 193
           LN+F  +W DL  EH L     M    F    A Y  YG+N+  V F
Sbjct: 166 LNDFFSNWRDLPSEHRLPFIYNMTAGAFYTYAAAYKRYGANTKIVHF 212


>U64599-5|AAM69110.1|  303|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform c
           protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 59  LNEFL-HWHDL-YEHNLQIYSKMFYNFFQVDTAIYFYYGSNSNPVLF 193
           LN+F  +W DL  EH L     M    F    A Y  YG+N+  V F
Sbjct: 166 LNDFFSNWRDLPSEHRLPFIYNMTAGAFYTYAAAYKRYGANTKIVHF 212


>U64599-4|AAB04562.1|  429|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform a
           protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 59  LNEFL-HWHDL-YEHNLQIYSKMFYNFFQVDTAIYFYYGSNSNPVLF 193
           LN+F  +W DL  EH L     M    F    A Y  YG+N+  V F
Sbjct: 166 LNDFFSNWRDLPSEHRLPFIYNMTAGAFYTYAAAYKRYGANTKIVHF 212


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 90  MNTICKF--IAKCFIISSKLTPRFISIMVRTQTPFYFGSHNI 209
           MNT   F  I     ISS+L   FI I+  +  PFY   HN+
Sbjct: 1   MNTTLDFTYIPDLMYISSELILIFICIVSYSTLPFYIYVHNL 42


>Z81479-6|CAB03938.1|  411|Caenorhabditis elegans Hypothetical
           protein C34F6.7 protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 167 HNRNKSRCQLGRNYKTFCYKFANCVHTDHASEE 69
           ++R  ++C   R  K FC +  +CV  D+ SEE
Sbjct: 380 YHRGSAQCPTCR--KNFCIRDVHCVDFDYISEE 410


>AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical
           protein C16C4.6 protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 157 INRGVNLEEIIKHFAINLQIVFI-QIMPVKKFIQCNK 50
           +NR  +LE+ +KHF + L ++ + Q++  +    C+K
Sbjct: 145 LNRNFSLEKCLKHFLVALNLLEVDQLLVSRNHEACDK 181


>AC024090-7|AAF35429.2|  294|Caenorhabditis elegans Hypothetical
           protein C52E2.1 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 157 INRGVNLEEIIKHFAINLQIVFIQIMPVKK 68
           +NR  ++E+IIK+F + L ++ ++ + V K
Sbjct: 91  LNRNFSIEKIIKNFLVALNLLEVKQLRVSK 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,159,268
Number of Sequences: 27780
Number of extensions: 157425
Number of successful extensions: 446
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)