Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6206
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   1.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.8  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   8.8  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 410 RLYNNLEPNSPLRYHVYYHVIELAARV 490
           RLY+ +   + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 485  RVGFVR---EVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNS 619
            R+GF++   E     E++R+E+         +   YRLL  +LKD++S
Sbjct: 1765 RIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHYRLLEYLLKDESS 1812


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 547 VSKLFPKLLNPSEDFPDKSNSCSQFYDMIIY 455
           + KLF   LN S D PD +    QFY++  Y
Sbjct: 656 MGKLFQVELNFSYDSPDVNLLIEQFYEITSY 686


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 62  QFKKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDD 208
           +  +GIK +G ++  +I+ +DQA     YF S   E  E  +    E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,391
Number of Sequences: 5004
Number of extensions: 60176
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)