Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6206
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70855-1|AAB09161.1| 390|Caenorhabditis elegans Hypothetical pr... 36 0.023
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis... 29 2.7
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z78014-1|CAB01428.1| 411|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 8.2
U80028-7|AAG23984.1| 370|Caenorhabditis elegans Serpentine rece... 28 8.2
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p... 28 8.2
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 8.2
>U70855-1|AAB09161.1| 390|Caenorhabditis elegans Hypothetical
protein K08F11.3 protein.
Length = 390
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +1
Query: 646 AYWGTYTDENASYAKRRCIKCLATALADPNTFLLDPL 756
A GTYT+++A+ A+ ++C+ TA+ DP +F D L
Sbjct: 195 ALLGTYTEKDAAAARDDAMECVRTAVVDPKSFSFDHL 231
>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
transmembrane conductanceregulator homolog protein 1
protein.
Length = 1247
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 107 DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFK 247
DI L +A +LR Y KSL + + SP+ + ++ V VC A K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 110 ISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAIL--N 283
+SLEDQ LEL + + E+ +EK+ K D K+ + + + E D EA N
Sbjct: 1256 LSLEDQNLELEERLQEMEEELLDEKNKKKEVD--AKVEQKSEENWGDWGEDDAEAATESN 1313
Query: 284 SIVSIMVSIPLERGENL 334
+VS + S E + L
Sbjct: 1314 VVVSTLQSTVAELQDRL 1330
>Z78014-1|CAB01428.1| 411|Caenorhabditis elegans Hypothetical
protein F42E8.1 protein.
Length = 411
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/75 (25%), Positives = 39/75 (52%)
Frame = +2
Query: 467 VIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIE 646
++E+A + E FT ++++ + F N P NE++Q + +L+ + ++ L A +
Sbjct: 89 IVEIADDMAHSGEKFT-MDEIWQGFVNNFPKNERIQAIGKLIGHLEGSESLFLMAYNLQN 147
Query: 647 PTGAHIQMKMLHMPR 691
G I++ L M R
Sbjct: 148 TKGNKIEVLKLGMKR 162
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 128 ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 220
A++L Y K AE++ PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 128 ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 220
A++L Y K AE++ PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756
>U80028-7|AAG23984.1| 370|Caenorhabditis elegans Serpentine
receptor, class w protein124 protein.
Length = 370
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 90 PCILIPFLNCILLFIIYKH*SECK 19
PCIL+P + C+L+ + K +C+
Sbjct: 233 PCILLPIVTCLLVMDLLKTRKKCR 256
>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
protein C14B9.8 protein.
Length = 1226
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +2
Query: 500 REVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIEPTGAHIQ 667
+++ G+ ++E CP +NE+++K+ + D NS A+ +I G+ ++
Sbjct: 873 KQITVGIASKKEEVITCPKTNEELEKIMNRAYG--DDANSFTLAQEIIVYLGSLVR 926
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 128 ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 220
A++L Y K AE++ PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,649,686
Number of Sequences: 27780
Number of extensions: 333624
Number of successful extensions: 1045
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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